JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
OR2G2_chr1_247583360_247594313	0/0	c0013	954	4	1	1	0	1	1	copy fasta	OR2G2	chr1	247583360	247594313
OR2G2_chr1_247583360_247594313	0/0	c0014	954	3	1	1	0	1	0	copy fasta	OR2G2	chr1	247583360	247594313
OR2G2_chr1_247583360_247594313	0/0	c0015	954	2	2	0	0	0	0	copy fasta	OR2G2	chr1	247583360	247594313
OR2G2_chr1_247583360_247594313	0/0	c0016	954	2	2	0	0	0	0	copy fasta	OR2G2	chr1	247583360	247594313
OR2G2_chr1_247583360_247594313	0/0	c0017	954	2	0	2	0	0	0	copy fasta	OR2G2	chr1	247583360	247594313
OR2G2_chr1_247583360_247594313	0/0	c0018	954	1	1	0	0	0	0	copy fasta	OR2G2	chr1	247583360	247594313
OR2G2_chr1_247583360_247594313	0/0	c0019	954	1	0	1	0	0	0	copy fasta	OR2G2	chr1	247583360	247594313
OR2G2_chr1_247583360_247594313	0/0	c0020	954	1	1	0	0	0	0	copy fasta	OR2G2	chr1	247583360	247594313
OR2G2_chr1_247583360_247594313	0/0	c0021	954	1	0	0	1	0	0	copy fasta	OR2G2	chr1	247583360	247594313
OR2G2_chr1_247583360_247594313	0/0	c0022	954	1	0	1	0	0	0	copy fasta	OR2G2	chr1	247583360	247594313
OR2G3_chr1_247600586_247611515	0/1	c0001	930	129	31	23	54	4	16	copy fasta	OR2G3	chr1	247600586	247611515
OR2G3_chr1_247600586_247611515	1/0	c0002	930	107	11	18	61	2	14	copy fasta	OR2G3	chr1	247600586	247611515
OR2G3_chr1_247600586_247611515	0/0	c0003	930	106	18	10	65	6	7	copy fasta	OR2G3	chr1	247600586	247611515
OR2G3_chr1_247600586_247611515	0/0	c0004	930	32	1	18	1	3	9	copy fasta	OR2G3	chr1	247600586	247611515
OR2G3_chr1_247600586_247611515	0/0	c0005	930	12	11	1	0	0	0	copy fasta	OR2G3	chr1	247600586	247611515
OR2G3_chr1_247600586_247611515	0/0	c0006	930	10	10	0	0	0	0	copy fasta	OR2G3	chr1	247600586	247611515
OR2G3_chr1_247600586_247611515	0/0	c0007	930	6	6	0	0	0	0	copy fasta	OR2G3	chr1	247600586	247611515
OR2G3_chr1_247600586_247611515	0/0	c0008	930	4	1	2	0	1	0	copy fasta	OR2G3	chr1	247600586	247611515
OR2G3_chr1_247600586_247611515	0/0	c0009	930	3	0	0	3	0	0	copy fasta	OR2G3	chr1	247600586	247611515
OR2G3_chr1_247600586_247611515	0/0	c0010	930	2	1	1	0	0	0	copy fasta	OR2G3	chr1	247600586	247611515
OR2G3_chr1_247600586_247611515	0/0	c0011	930	1	0	1	0	0	0	copy fasta	OR2G3	chr1	247600586	247611515
OR2H1_chr6_29452155_29469328	0/1	c0001	951	341	54	68	162	13	43	copy fasta	OR2H1	chr6	29452155	29469328
OR2H1_chr6_29452155_29469328	0/0	c0002	951	72	19	5	45	0	3	copy fasta	OR2H1	chr6	29452155	29469328
OR2H1_chr6_29452155_29469328	0/0	c0003	951	12	9	2	1	0	0	copy fasta	OR2H1	chr6	29452155	29469328
OR2H1_chr6_29452155_29469328	0/0	c0004	951	5	4	1	0	0	0	copy fasta	OR2H1	chr6	29452155	29469328
OR2H1_chr6_29452155_29469328	0/0	c0005	951	4	0	3	0	1	0	copy fasta	OR2H1	chr6	29452155	29469328
OR2H1_chr6_29452155_29469328	0/0	c0006	951	3	0	0	3	0	0	copy fasta	OR2H1	chr6	29452155	29469328
OR2H1_chr6_29452155_29469328	0/0	c0007	951	3	3	0	0	0	0	copy fasta	OR2H1	chr6	29452155	29469328
OR2H1_chr6_29452155_29469328	0/0	c0008	951	2	0	1	1	0	0	copy fasta	OR2H1	chr6	29452155	29469328
OR2H1_chr6_29452155_29469328	0/0	c0009	951	2	2	0	0	0	0	copy fasta	OR2H1	chr6	29452155	29469328
OR2H1_chr6_29452155_29469328	0/0	c0010	951	2	0	0	2	0	0	copy fasta	OR2H1	chr6	29452155	29469328
OR2H1_chr6_29452155_29469328	0/0	c0011	951	1	1	0	0	0	0	copy fasta	OR2H1	chr6	29452155	29469328
OR2H1_chr6_29452155_29469328	0/0	c0012	951	1	1	0	0	0	0	copy fasta	OR2H1	chr6	29452155	29469328
OR2H1_chr6_29452155_29469328	0/0	c0013	951	1	0	0	0	0	1	copy fasta	OR2H1	chr6	29452155	29469328
OR2H1_chr6_29452155_29469328	0/0	c0014	951	1	0	0	0	0	1	copy fasta	OR2H1	chr6	29452155	29469328
OR2H1_chr6_29452155_29469328	0/0	c0015	951	1	1	0	0	0	0	copy fasta	OR2H1	chr6	29452155	29469328
OR2H1_chr6_29452155_29469328	0/0	c0016	951	1	0	0	1	0	0	copy fasta	OR2H1	chr6	29452155	29469328
OR2H1_chr6_29452155_29469328	0/0	c0017	951	1	0	0	1	0	0	copy fasta	OR2H1	chr6	29452155	29469328
OR2H2_chr6_29580121_29595500	0/1	c0001	939	153	22	27	91	2	10	copy fasta	OR2H2	chr6	29580121	29595500
OR2H2_chr6_29580121_29595500	0/0	c0002	939	97	8	17	53	9	10	copy fasta	OR2H2	chr6	29580121	29595500
OR2H2_chr6_29580121_29595500	0/0	c0003	939	88	48	10	24	2	4	copy fasta	OR2H2	chr6	29580121	29595500
OR2H2_chr6_29580121_29595500	0/0	c0004	939	73	9	20	27	3	14	copy fasta	OR2H2	chr6	29580121	29595500
OR2H2_chr6_29580121_29595500	0/0	c0005	939	27	2	3	20	0	2	copy fasta	OR2H2	chr6	29580121	29595500
OR2H2_chr6_29580121_29595500	0/0	c0006	939	4	0	0	2	0	2	copy fasta	OR2H2	chr6	29580121	29595500
OR2H2_chr6_29580121_29595500	0/0	c0007	939	3	0	3	0	0	0	copy fasta	OR2H2	chr6	29580121	29595500
OR2H2_chr6_29580121_29595500	0/0	c0008	939	3	0	0	3	0	0	copy fasta	OR2H2	chr6	29580121	29595500
OR2H2_chr6_29580121_29595500	0/0	c0009	939	3	0	0	0	0	3	copy fasta	OR2H2	chr6	29580121	29595500
OR2H2_chr6_29580121_29595500	0/0	c0010	939	2	0	0	0	0	2	copy fasta	OR2H2	chr6	29580121	29595500
OR2H2_chr6_29580121_29595500	0/0	c0011	939	2	2	0	0	0	0	copy fasta	OR2H2	chr6	29580121	29595500
OR2H2_chr6_29580121_29595500	0/0	c0012	939	1	1	0	0	0	0	copy fasta	OR2H2	chr6	29580121	29595500