JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
OR2H2_chr6_29580121_29595500	0/0	c0013	939	1	1	0	0	0	0	copy fasta	OR2H2	chr6	29580121	29595500
OR2H2_chr6_29580121_29595500	0/0	c0014	939	1	0	0	0	0	1	copy fasta	OR2H2	chr6	29580121	29595500
OR2H2_chr6_29580121_29595500	0/0	c0015	939	1	0	1	0	0	0	copy fasta	OR2H2	chr6	29580121	29595500
OR2H2_chr6_29580121_29595500	0/0	c0016	939	1	1	0	0	0	0	copy fasta	OR2H2	chr6	29580121	29595500
OR2H2_chr6_29580121_29595500	0/0	c0017	939	1	0	1	0	0	0	copy fasta	OR2H2	chr6	29580121	29595500
OR2I1P_chr6_29545407_29562773	0/1	c0001	948	208	25	42	101	12	27	copy fasta	OR2I1P	chr6	29545407	29562773
OR2I1P_chr6_29545407_29562773	0/0	c0002	948	128	24	27	60	2	15	copy fasta	OR2I1P	chr6	29545407	29562773
OR2I1P_chr6_29545407_29562773	0/0	c0003	948	62	33	7	22	0	0	copy fasta	OR2I1P	chr6	29545407	29562773
OR2I1P_chr6_29545407_29562773	0/0	c0004	948	34	10	0	22	0	2	copy fasta	OR2I1P	chr6	29545407	29562773
OR2I1P_chr6_29545407_29562773	0/0	c0005	948	11	0	0	11	0	0	copy fasta	OR2I1P	chr6	29545407	29562773
OR2I1P_chr6_29545407_29562773	0/0	c0006	948	8	4	2	0	0	2	copy fasta	OR2I1P	chr6	29545407	29562773
OR2I1P_chr6_29545407_29562773	0/0	c0007	948	5	0	4	0	1	0	copy fasta	OR2I1P	chr6	29545407	29562773
OR2I1P_chr6_29545407_29562773	0/0	c0008	948	2	1	0	0	1	0	copy fasta	OR2I1P	chr6	29545407	29562773
OR2I1P_chr6_29545407_29562773	0/0	c0009	948	2	0	0	1	0	1	copy fasta	OR2I1P	chr6	29545407	29562773
OR2I1P_chr6_29545407_29562773	0/0	c0010	948	2	0	2	0	0	0	copy fasta	OR2I1P	chr6	29545407	29562773
OR2I1P_chr6_29545407_29562773	0/0	c0011	948	1	0	0	1	0	0	copy fasta	OR2I1P	chr6	29545407	29562773
OR2I1P_chr6_29545407_29562773	0/0	c0012	948	1	0	0	1	0	0	copy fasta	OR2I1P	chr6	29545407	29562773
OR2I1P_chr6_29545407_29562773	0/0	c0013	948	1	1	0	0	0	0	copy fasta	OR2I1P	chr6	29545407	29562773
OR2I1P_chr6_29545407_29562773	0/0	c0014	948	1	0	0	0	0	1	copy fasta	OR2I1P	chr6	29545407	29562773
OR2I1P_chr6_29545407_29562773	0/0	c0015	948	1	0	0	1	0	0	copy fasta	OR2I1P	chr6	29545407	29562773
OR2I1P_chr6_29545407_29562773	0/0	c0016	948	1	0	0	1	0	0	copy fasta	OR2I1P	chr6	29545407	29562773
OR2I1P_chr6_29545407_29562773	0/0	c0017	948	1	0	0	1	0	0	copy fasta	OR2I1P	chr6	29545407	29562773
OR2J1_chr6_29094490_29107701	0/1	c0001	939	146	60	18	47	3	17	copy fasta	OR2J1	chr6	29094490	29107701
OR2J1_chr6_29094490_29107701	0/0	c0002	939	142	3	33	81	5	20	copy fasta	OR2J1	chr6	29094490	29107701
OR2J1_chr6_29094490_29107701	0/0	c0003	939	133	22	22	74	6	9	copy fasta	OR2J1	chr6	29094490	29107701
OR2J1_chr6_29094490_29107701	0/0	c0004	939	14	11	3	0	0	0	copy fasta	OR2J1	chr6	29094490	29107701
OR2J1_chr6_29094490_29107701	0/0	c0005	939	5	0	0	5	0	0	copy fasta	OR2J1	chr6	29094490	29107701
OR2J1_chr6_29094490_29107701	0/0	c0006	939	2	0	2	0	0	0	copy fasta	OR2J1	chr6	29094490	29107701
OR2J1_chr6_29094490_29107701	0/0	c0007	939	1	1	0	0	0	0	copy fasta	OR2J1	chr6	29094490	29107701
OR2J1_chr6_29094490_29107701	0/0	c0008	939	1	0	0	1	0	0	copy fasta	OR2J1	chr6	29094490	29107701
OR2J1_chr6_29094490_29107701	0/0	c0009	939	1	1	0	0	0	0	copy fasta	OR2J1	chr6	29094490	29107701
OR2J2_chr6_29165907_29180811	0/0	c0001	939	138	3	32	76	6	21	copy fasta	OR2J2	chr6	29165907	29180811
OR2J2_chr6_29165907_29180811	0/0	c0002	939	131	55	21	39	3	13	copy fasta	OR2J2	chr6	29165907	29180811
OR2J2_chr6_29165907_29180811	0/0	c0003	939	104	14	13	70	3	4	copy fasta	OR2J2	chr6	29165907	29180811
OR2J2_chr6_29165907_29180811	0/0	c0004	939	20	0	1	17	0	2	copy fasta	OR2J2	chr6	29165907	29180811
OR2J2_chr6_29165907_29180811	0/1	c0005	939	20	5	4	6	1	3	copy fasta	OR2J2	chr6	29165907	29180811
OR2J2_chr6_29165907_29180811	0/0	c0006	939	14	6	2	0	3	3	copy fasta	OR2J2	chr6	29165907	29180811
OR2J2_chr6_29165907_29180811	0/0	c0007	939	4	4	0	0	0	0	copy fasta	OR2J2	chr6	29165907	29180811
OR2J2_chr6_29165907_29180811	0/0	c0008	939	3	3	0	0	0	0	copy fasta	OR2J2	chr6	29165907	29180811
OR2J2_chr6_29165907_29180811	0/0	c0009	939	2	0	0	2	0	0	copy fasta	OR2J2	chr6	29165907	29180811
OR2J2_chr6_29165907_29180811	0/0	c0010	939	1	0	0	1	0	0	copy fasta	OR2J2	chr6	29165907	29180811
OR2J2_chr6_29165907_29180811	0/0	c0011	939	1	1	0	0	0	0	copy fasta	OR2J2	chr6	29165907	29180811
OR2J2_chr6_29165907_29180811	0/0	c0012	939	1	0	1	0	0	0	copy fasta	OR2J2	chr6	29165907	29180811
OR2J2_chr6_29165907_29180811	0/0	c0013	939	1	1	0	0	0	0	copy fasta	OR2J2	chr6	29165907	29180811
OR2J2_chr6_29165907_29180811	0/0	c0014	939	1	1	0	0	0	0	copy fasta	OR2J2	chr6	29165907	29180811
OR2J2_chr6_29165907_29180811	0/0	c0015	939	1	1	0	0	0	0	copy fasta	OR2J2	chr6	29165907	29180811
OR2J2_chr6_29165907_29180811	0/0	c0016	939	1	0	0	1	0	0	copy fasta	OR2J2	chr6	29165907	29180811
OR2J3_chr6_29103058_29119770	0/0	c0001	936	143	22	23	83	6	9	copy fasta	OR2J3	chr6	29103058	29119770
OR2J3_chr6_29103058_29119770	0/0	c0002	936	140	3	33	77	7	20	copy fasta	OR2J3	chr6	29103058	29119770
OR2J3_chr6_29103058_29119770	0/0	c0003	936	68	34	7	20	2	5	copy fasta	OR2J3	chr6	29103058	29119770