JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
OR2J3_chr6_29103058_29119770	0/1	c0004	936	59	19	8	21	1	9	copy fasta	OR2J3	chr6	29103058	29119770
OR2J3_chr6_29103058_29119770	0/0	c0005	936	14	9	5	0	0	0	copy fasta	OR2J3	chr6	29103058	29119770
OR2J3_chr6_29103058_29119770	0/0	c0006	936	8	7	1	0	0	0	copy fasta	OR2J3	chr6	29103058	29119770
OR2J3_chr6_29103058_29119770	0/0	c0007	936	2	1	1	0	0	0	copy fasta	OR2J3	chr6	29103058	29119770
OR2J3_chr6_29103058_29119770	0/0	c0008	936	1	1	0	0	0	0	copy fasta	OR2J3	chr6	29103058	29119770
OR2J3_chr6_29103058_29119770	0/0	c0009	936	1	0	0	0	0	1	copy fasta	OR2J3	chr6	29103058	29119770
OR2J3_chr6_29103058_29119770	0/0	c0010	936	1	0	0	1	0	0	copy fasta	OR2J3	chr6	29103058	29119770
OR2K2_chr9_111322229_111335224	1/0	c0001	951	229	53	41	100	9	25	copy fasta	OR2K2	chr9	111322229	111335224
OR2K2_chr9_111322229_111335224	0/1	c0002	951	122	28	26	50	7	10	copy fasta	OR2K2	chr9	111322229	111335224
OR2K2_chr9_111322229_111335224	0/0	c0003	951	54	0	1	44	1	8	copy fasta	OR2K2	chr9	111322229	111335224
OR2K2_chr9_111322229_111335224	0/0	c0004	951	8	8	0	0	0	0	copy fasta	OR2K2	chr9	111322229	111335224
OR2K2_chr9_111322229_111335224	0/0	c0005	951	3	0	0	3	0	0	copy fasta	OR2K2	chr9	111322229	111335224
OR2K2_chr9_111322229_111335224	0/0	c0006	951	2	2	0	0	0	0	copy fasta	OR2K2	chr9	111322229	111335224
OR2K2_chr9_111322229_111335224	0/0	c0007	951	2	2	0	0	0	0	copy fasta	OR2K2	chr9	111322229	111335224
OR2K2_chr9_111322229_111335224	0/0	c0008	951	1	1	0	0	0	0	copy fasta	OR2K2	chr9	111322229	111335224
OR2K2_chr9_111322229_111335224	0/0	c0009	951	1	0	0	1	0	0	copy fasta	OR2K2	chr9	111322229	111335224
OR2K2_chr9_111322229_111335224	0/0	c0010	951	1	0	0	0	0	1	copy fasta	OR2K2	chr9	111322229	111335224
OR2K2_chr9_111322229_111335224	0/0	c0011	951	1	0	0	1	0	0	copy fasta	OR2K2	chr9	111322229	111335224
OR2K2_chr9_111322229_111335224	0/0	c0012	951	1	0	0	1	0	0	copy fasta	OR2K2	chr9	111322229	111335224
OR2K2_chr9_111322229_111335224	0/0	c0013	951	1	0	0	1	0	0	copy fasta	OR2K2	chr9	111322229	111335224
OR2K2_chr9_111322229_111335224	0/0	c0014	951	1	0	0	0	1	0	copy fasta	OR2K2	chr9	111322229	111335224
OR2K2_chr9_111322229_111335224	0/0	c0015	951	1	0	0	1	0	0	copy fasta	OR2K2	chr9	111322229	111335224
OR2L13_chr1_248090184_248106163	1/1	c0001	939	395	59	72	209	11	42	copy fasta	OR2L13	chr1	248090184	248106163
OR2L13_chr1_248090184_248106163	0/0	c0002	939	23	22	1	0	0	0	copy fasta	OR2L13	chr1	248090184	248106163
OR2L13_chr1_248090184_248106163	0/0	c0003	939	7	6	1	0	0	0	copy fasta	OR2L13	chr1	248090184	248106163
OR2L13_chr1_248090184_248106163	0/0	c0004	939	3	3	0	0	0	0	copy fasta	OR2L13	chr1	248090184	248106163
OR2L13_chr1_248090184_248106163	0/0	c0005	939	3	0	0	3	0	0	copy fasta	OR2L13	chr1	248090184	248106163
OR2L13_chr1_248090184_248106163	0/0	c0006	939	2	1	0	1	0	0	copy fasta	OR2L13	chr1	248090184	248106163
OR2L13_chr1_248090184_248106163	0/0	c0007	939	2	0	2	0	0	0	copy fasta	OR2L13	chr1	248090184	248106163
OR2L13_chr1_248090184_248106163	0/0	c0008	939	1	0	0	0	1	0	copy fasta	OR2L13	chr1	248090184	248106163
OR2L13_chr1_248090184_248106163	0/0	c0009	939	1	0	1	0	0	0	copy fasta	OR2L13	chr1	248090184	248106163
OR2L13_chr1_248090184_248106163	0/0	c0010	939	1	0	1	0	0	0	copy fasta	OR2L13	chr1	248090184	248106163
OR2L13_chr1_248090184_248106163	0/0	c0011	939	1	1	0	0	0	0	copy fasta	OR2L13	chr1	248090184	248106163
OR2L13_chr1_248090184_248106163	0/0	c0012	939	1	0	0	1	0	0	copy fasta	OR2L13	chr1	248090184	248106163
OR2L2_chr1_248025070_248047305	1/1	c0001	939	213	27	47	96	12	29	copy fasta	OR2L2	chr1	248025070	248047305
OR2L2_chr1_248025070_248047305	0/0	c0002	939	144	37	14	84	2	7	copy fasta	OR2L2	chr1	248025070	248047305
OR2L2_chr1_248025070_248047305	0/0	c0003	939	13	11	2	0	0	0	copy fasta	OR2L2	chr1	248025070	248047305
OR2L2_chr1_248025070_248047305	0/0	c0004	939	6	5	1	0	0	0	copy fasta	OR2L2	chr1	248025070	248047305
OR2L2_chr1_248025070_248047305	0/0	c0005	939	5	4	1	0	0	0	copy fasta	OR2L2	chr1	248025070	248047305
OR2L2_chr1_248025070_248047305	0/0	c0006	939	4	3	1	0	0	0	copy fasta	OR2L2	chr1	248025070	248047305
OR2L2_chr1_248025070_248047305	0/0	c0007	939	4	4	0	0	0	0	copy fasta	OR2L2	chr1	248025070	248047305
OR2L2_chr1_248025070_248047305	0/0	c0008	939	2	0	0	2	0	0	copy fasta	OR2L2	chr1	248025070	248047305
OR2L2_chr1_248025070_248047305	0/0	c0009	939	2	2	0	0	0	0	copy fasta	OR2L2	chr1	248025070	248047305
OR2L2_chr1_248025070_248047305	0/0	c0010	939	1	0	0	1	0	0	copy fasta	OR2L2	chr1	248025070	248047305
OR2L2_chr1_248025070_248047305	0/0	c0011	939	1	0	1	0	0	0	copy fasta	OR2L2	chr1	248025070	248047305
OR2L2_chr1_248025070_248047305	0/0	c0012	939	1	1	0	0	0	0	copy fasta	OR2L2	chr1	248025070	248047305
OR2L2_chr1_248025070_248047305	0/0	c0013	939	1	0	0	1	0	0	copy fasta	OR2L2	chr1	248025070	248047305
OR2L2_chr1_248025070_248047305	0/0	c0014	939	1	0	1	0	0	0	copy fasta	OR2L2	chr1	248025070	248047305
OR2L3_chr1_248041836_248068407	1/1	c0001	939	225	28	42	116	11	26	copy fasta	OR2L3	chr1	248041836	248068407
OR2L3_chr1_248041836_248068407	0/0	c0002	939	114	23	13	71	2	5	copy fasta	OR2L3	chr1	248041836	248068407