JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
OR2L3_chr1_248041836_248068407	0/0	c0003	939	31	29	2	0	0	0	copy fasta	OR2L3	chr1	248041836	248068407
OR2L3_chr1_248041836_248068407	0/0	c0004	939	9	8	1	0	0	0	copy fasta	OR2L3	chr1	248041836	248068407
OR2L3_chr1_248041836_248068407	0/0	c0005	939	6	1	4	0	1	0	copy fasta	OR2L3	chr1	248041836	248068407
OR2L3_chr1_248041836_248068407	0/0	c0006	939	5	5	0	0	0	0	copy fasta	OR2L3	chr1	248041836	248068407
OR2L3_chr1_248041836_248068407	0/0	c0007	939	3	0	0	2	0	1	copy fasta	OR2L3	chr1	248041836	248068407
OR2L3_chr1_248041836_248068407	0/0	c0008	939	2	0	0	2	0	0	copy fasta	OR2L3	chr1	248041836	248068407
OR2L3_chr1_248041836_248068407	0/0	c0009	939	2	2	0	0	0	0	copy fasta	OR2L3	chr1	248041836	248068407
OR2L3_chr1_248041836_248068407	0/0	c0010	939	1	0	0	1	0	0	copy fasta	OR2L3	chr1	248041836	248068407
OR2L5_chr1_248008660_248029276	1/1	c0001	939	354	72	65	177	11	27	copy fasta	OR2L5	chr1	248008660	248029276
OR2L5_chr1_248008660_248029276	0/0	c0002	939	13	0	0	12	0	1	copy fasta	OR2L5	chr1	248008660	248029276
OR2L5_chr1_248008660_248029276	0/0	c0003	939	12	12	0	0	0	0	copy fasta	OR2L5	chr1	248008660	248029276
OR2L5_chr1_248008660_248029276	0/0	c0004	939	11	0	7	0	2	2	copy fasta	OR2L5	chr1	248008660	248029276
OR2L5_chr1_248008660_248029276	0/0	c0005	936	5	3	2	0	0	0	copy fasta	OR2L5	chr1	248008660	248029276
OR2L5_chr1_248008660_248029276	0/0	c0006	939	2	1	0	1	0	0	copy fasta	OR2L5	chr1	248008660	248029276
OR2L5_chr1_248008660_248029276	0/0	c0007	939	2	0	0	2	0	0	copy fasta	OR2L5	chr1	248008660	248029276
OR2L5_chr1_248008660_248029276	0/0	c0008	939	2	1	1	0	0	0	copy fasta	OR2L5	chr1	248008660	248029276
OR2L5_chr1_248008660_248029276	0/0	c0009	939	1	0	0	1	0	0	copy fasta	OR2L5	chr1	248008660	248029276
OR2L5_chr1_248008660_248029276	0/0	c0010	939	1	0	0	0	0	1	copy fasta	OR2L5	chr1	248008660	248029276
OR2L5_chr1_248008660_248029276	0/0	c0011	939	1	1	0	0	0	0	copy fasta	OR2L5	chr1	248008660	248029276
OR2L5_chr1_248008660_248029276	0/0	c0012	939	1	0	1	0	0	0	copy fasta	OR2L5	chr1	248008660	248029276
OR2L5_chr1_248008660_248029276	0/0	c0013	939	1	0	0	1	0	0	copy fasta	OR2L5	chr1	248008660	248029276
OR2L5_chr1_248008660_248029276	0/0	c0014	939	1	0	0	0	0	1	copy fasta	OR2L5	chr1	248008660	248029276
OR2L5_chr1_248008660_248029276	0/0	c0015	939	1	1	0	0	0	0	copy fasta	OR2L5	chr1	248008660	248029276
OR2L5_chr1_248008660_248029276	0/0	c0016	939	1	0	0	0	1	0	copy fasta	OR2L5	chr1	248008660	248029276
OR2L5_chr1_248008660_248029276	0/0	c0017	939	1	0	0	1	0	0	copy fasta	OR2L5	chr1	248008660	248029276
OR2L5_chr1_248008660_248029276	0/0	c0018	939	1	1	0	0	0	0	copy fasta	OR2L5	chr1	248008660	248029276
OR2L5_chr1_248008660_248029276	0/0	c0019	939	1	0	0	1	0	0	copy fasta	OR2L5	chr1	248008660	248029276
OR2L8_chr1_247943858_247954796	0/0	c0001	939	141	9	43	56	12	21	copy fasta	OR2L8	chr1	247943858	247954796
OR2L8_chr1_247943858_247954796	0/0	c0002	939	124	14	22	67	3	18	copy fasta	OR2L8	chr1	247943858	247954796
OR2L8_chr1_247943858_247954796	0/0	c0003	939	70	46	8	16	0	0	copy fasta	OR2L8	chr1	247943858	247954796
OR2L8_chr1_247943858_247954796	0/0	c0004	939	14	0	1	11	1	1	copy fasta	OR2L8	chr1	247943858	247954796
OR2L8_chr1_247943858_247954796	0/0	c0005	939	7	6	1	0	0	0	copy fasta	OR2L8	chr1	247943858	247954796
OR2L8_chr1_247943858_247954796	0/0	c0006	939	7	7	0	0	0	0	copy fasta	OR2L8	chr1	247943858	247954796
OR2L8_chr1_247943858_247954796	1/0	c0007	939	6	5	0	0	0	0	copy fasta	OR2L8	chr1	247943858	247954796
OR2L8_chr1_247943858_247954796	0/0	c0008	939	3	3	0	0	0	0	copy fasta	OR2L8	chr1	247943858	247954796
OR2L8_chr1_247943858_247954796	0/0	c0009	939	2	1	1	0	0	0	copy fasta	OR2L8	chr1	247943858	247954796
OR2L8_chr1_247943858_247954796	0/0	c0010	939	1	1	0	0	0	0	copy fasta	OR2L8	chr1	247943858	247954796
OR2L8_chr1_247943858_247954796	0/0	c0011	939	1	0	0	1	0	0	copy fasta	OR2L8	chr1	247943858	247954796
OR2L8_chr1_247943858_247954796	0/0	c0012	939	1	0	0	0	0	1	copy fasta	OR2L8	chr1	247943858	247954796
OR2L8_chr1_247943858_247954796	0/0	c0013	939	1	0	0	1	0	0	copy fasta	OR2L8	chr1	247943858	247954796
OR2L8_chr1_247943858_247954796	0/0	c0014	939	1	0	0	0	0	1	copy fasta	OR2L8	chr1	247943858	247954796
OR2M2_chr1_248169821_248186067	0/0	c0001	1044	236	55	54	86	12	29	copy fasta	OR2M2	chr1	248169821	248186067
OR2M2_chr1_248169821_248186067	1/1	c0002	1044	198	28	21	126	6	15	copy fasta	OR2M2	chr1	248169821	248186067
OR2M2_chr1_248169821_248186067	0/0	c0003	1044	6	5	1	0	0	0	copy fasta	OR2M2	chr1	248169821	248186067
OR2M2_chr1_248169821_248186067	0/0	c0004	1044	6	5	1	0	0	0	copy fasta	OR2M2	chr1	248169821	248186067
OR2M2_chr1_248169821_248186067	0/0	c0005	1044	2	0	0	2	0	0	copy fasta	OR2M2	chr1	248169821	248186067
OR2M2_chr1_248169821_248186067	0/0	c0006	1044	2	1	1	0	0	0	copy fasta	OR2M2	chr1	248169821	248186067
OR2M2_chr1_248169821_248186067	0/0	c0007	1044	2	2	0	0	0	0	copy fasta	OR2M2	chr1	248169821	248186067
OR2M2_chr1_248169821_248186067	0/0	c0008	1044	1	0	1	0	0	0	copy fasta	OR2M2	chr1	248169821	248186067
OR2M2_chr1_248169821_248186067	0/0	c0009	1044	1	1	0	0	0	0	copy fasta	OR2M2	chr1	248169821	248186067