JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
OR2M2_chr1_248169821_248186067	0/0	c0010	1044	1	0	0	1	0	0	copy fasta	OR2M2	chr1	248169821	248186067
OR2M2_chr1_248169821_248186067	0/0	c0011	1044	1	1	0	0	0	0	copy fasta	OR2M2	chr1	248169821	248186067
OR2M2_chr1_248169821_248186067	0/0	c0012	1044	1	0	1	0	0	0	copy fasta	OR2M2	chr1	248169821	248186067
OR2M2_chr1_248169821_248186067	0/0	c0013	1044	1	0	0	1	0	0	copy fasta	OR2M2	chr1	248169821	248186067
OR2M3_chr1_248192265_248217925	0/0	c0001	939	152	27	36	61	8	20	copy fasta	OR2M3	chr1	248192265	248217925
OR2M3_chr1_248192265_248217925	0/1	c0002	939	118	14	17	70	2	14	copy fasta	OR2M3	chr1	248192265	248217925
OR2M3_chr1_248192265_248217925	1/0	c0003	939	117	40	15	56	4	1	copy fasta	OR2M3	chr1	248192265	248217925
OR2M3_chr1_248192265_248217925	0/0	c0004	939	9	0	1	8	0	0	copy fasta	OR2M3	chr1	248192265	248217925
OR2M3_chr1_248192265_248217925	0/0	c0005	939	3	3	0	0	0	0	copy fasta	OR2M3	chr1	248192265	248217925
OR2M3_chr1_248192265_248217925	0/0	c0006	939	3	3	0	0	0	0	copy fasta	OR2M3	chr1	248192265	248217925
OR2M3_chr1_248192265_248217925	0/0	c0007	939	2	1	1	0	0	0	copy fasta	OR2M3	chr1	248192265	248217925
OR2M3_chr1_248192265_248217925	0/0	c0008	939	1	1	0	0	0	0	copy fasta	OR2M3	chr1	248192265	248217925
OR2M3_chr1_248192265_248217925	0/0	c0009	939	1	1	0	0	0	0	copy fasta	OR2M3	chr1	248192265	248217925
OR2M3_chr1_248192265_248217925	0/0	c0010	939	1	0	0	1	0	0	copy fasta	OR2M3	chr1	248192265	248217925
OR2M3_chr1_248192265_248217925	0/0	c0011	939	1	1	0	0	0	0	copy fasta	OR2M3	chr1	248192265	248217925
OR2M3_chr1_248192265_248217925	0/0	c0012	939	1	0	0	0	0	1	copy fasta	OR2M3	chr1	248192265	248217925
OR2M3_chr1_248192265_248217925	0/0	c0013	939	1	1	0	0	0	0	copy fasta	OR2M3	chr1	248192265	248217925
OR2M4_chr1_248226417_248249679	0/1	c0001	936	278	44	53	130	10	40	copy fasta	OR2M4	chr1	248226417	248249679
OR2M4_chr1_248226417_248249679	1/0	c0002	936	121	50	15	50	4	1	copy fasta	OR2M4	chr1	248226417	248249679
OR2M4_chr1_248226417_248249679	0/0	c0003	936	1	0	0	0	0	1	copy fasta	OR2M4	chr1	248226417	248249679
OR2M5_chr1_248140148_248151086	1/1	c0001	939	308	74	44	146	12	30	copy fasta	OR2M5	chr1	248140148	248151086
OR2M5_chr1_248140148_248151086	0/0	c0002	939	24	5	2	16	0	1	copy fasta	OR2M5	chr1	248140148	248151086
OR2M5_chr1_248140148_248151086	0/0	c0003	939	11	0	0	11	0	0	copy fasta	OR2M5	chr1	248140148	248151086
OR2M5_chr1_248140148_248151086	0/0	c0004	939	8	0	8	0	0	0	copy fasta	OR2M5	chr1	248140148	248151086
OR2M5_chr1_248140148_248151086	0/0	c0005	939	7	0	2	5	0	0	copy fasta	OR2M5	chr1	248140148	248151086
OR2M5_chr1_248140148_248151086	0/0	c0006	939	5	0	0	5	0	0	copy fasta	OR2M5	chr1	248140148	248151086
OR2M5_chr1_248140148_248151086	0/0	c0007	939	5	5	0	0	0	0	copy fasta	OR2M5	chr1	248140148	248151086
OR2M5_chr1_248140148_248151086	0/0	c0008	939	4	0	0	4	0	0	copy fasta	OR2M5	chr1	248140148	248151086
OR2M5_chr1_248140148_248151086	0/0	c0009	939	3	3	0	0	0	0	copy fasta	OR2M5	chr1	248140148	248151086
OR2M5_chr1_248140148_248151086	0/0	c0010	939	2	1	1	0	0	0	copy fasta	OR2M5	chr1	248140148	248151086
OR2M5_chr1_248140148_248151086	0/0	c0011	939	1	0	1	0	0	0	copy fasta	OR2M5	chr1	248140148	248151086
OR2M5_chr1_248140148_248151086	0/0	c0012	939	1	1	0	0	0	0	copy fasta	OR2M5	chr1	248140148	248151086
OR2M5_chr1_248140148_248151086	0/0	c0013	939	1	0	1	0	0	0	copy fasta	OR2M5	chr1	248140148	248151086
OR2M5_chr1_248140148_248151086	0/0	c0014	939	1	1	0	0	0	0	copy fasta	OR2M5	chr1	248140148	248151086
OR2M5_chr1_248140148_248151086	0/0	c0015	939	1	0	0	1	0	0	copy fasta	OR2M5	chr1	248140148	248151086
OR2M5_chr1_248140148_248151086	0/0	c0016	939	1	0	0	1	0	0	copy fasta	OR2M5	chr1	248140148	248151086
OR2M5_chr1_248140148_248151086	0/0	c0017	939	1	0	0	1	0	0	copy fasta	OR2M5	chr1	248140148	248151086
OR2M5_chr1_248140148_248151086	0/0	c0018	939	1	1	0	0	0	0	copy fasta	OR2M5	chr1	248140148	248151086
OR2M5_chr1_248140148_248151086	0/0	c0019	939	1	1	0	0	0	0	copy fasta	OR2M5	chr1	248140148	248151086
OR2M5_chr1_248140148_248151086	0/0	c0020	939	1	0	0	0	0	1	copy fasta	OR2M5	chr1	248140148	248151086
OR2M5_chr1_248140148_248151086	0/0	c0021	939	1	0	1	0	0	0	copy fasta	OR2M5	chr1	248140148	248151086
OR2M5_chr1_248140148_248151086	0/0	c0022	939	1	1	0	0	0	0	copy fasta	OR2M5	chr1	248140148	248151086
OR2M5_chr1_248140148_248151086	0/0	c0023	939	1	1	0	0	0	0	copy fasta	OR2M5	chr1	248140148	248151086
OR2M7_chr1_248318630_248329568	0/0	c0001	939	145	7	26	82	6	24	copy fasta	OR2M7	chr1	248318630	248329568
OR2M7_chr1_248318630_248329568	0/0	c0002	939	93	2	15	64	4	8	copy fasta	OR2M7	chr1	248318630	248329568
OR2M7_chr1_248318630_248329568	1/0	c0003	939	71	13	17	34	4	2	copy fasta	OR2M7	chr1	248318630	248329568
OR2M7_chr1_248318630_248329568	0/0	c0004	939	63	55	5	3	0	0	copy fasta	OR2M7	chr1	248318630	248329568
OR2M7_chr1_248318630_248329568	0/0	c0005	939	9	9	0	0	0	0	copy fasta	OR2M7	chr1	248318630	248329568
OR2M7_chr1_248318630_248329568	0/0	c0006	939	7	6	1	0	0	0	copy fasta	OR2M7	chr1	248318630	248329568
OR2M7_chr1_248318630_248329568	0/0	c0007	939	2	1	1	0	0	0	copy fasta	OR2M7	chr1	248318630	248329568