JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
OR2M7_chr1_248318630_248329568	0/0	c0008	939	2	2	0	0	0	0	copy fasta	OR2M7	chr1	248318630	248329568
OR2M7_chr1_248318630_248329568	0/0	c0009	939	2	2	0	0	0	0	copy fasta	OR2M7	chr1	248318630	248329568
OR2M7_chr1_248318630_248329568	0/0	c0010	939	1	0	0	1	0	0	copy fasta	OR2M7	chr1	248318630	248329568
OR2M7_chr1_248318630_248329568	0/0	c0011	939	1	0	0	1	0	0	copy fasta	OR2M7	chr1	248318630	248329568
OR2M7_chr1_248318630_248329568	0/0	c0012	939	1	0	1	0	0	0	copy fasta	OR2M7	chr1	248318630	248329568
OR2M7_chr1_248318630_248329568	0/0	c0013	939	1	0	0	1	0	0	copy fasta	OR2M7	chr1	248318630	248329568
OR2M7_chr1_248318630_248329568	0/0	c0014	939	1	1	0	0	0	0	copy fasta	OR2M7	chr1	248318630	248329568
OR2S2_chr9_35952108_35963154	1/1	c0001	960	287	46	49	141	13	36	copy fasta	OR2S2	chr9	35952108	35963154
OR2S2_chr9_35952108_35963154	0/0	c0002	960	128	26	23	63	3	13	copy fasta	OR2S2	chr9	35952108	35963154
OR2S2_chr9_35952108_35963154	0/0	c0003	960	10	8	1	1	0	0	copy fasta	OR2S2	chr9	35952108	35963154
OR2S2_chr9_35952108_35963154	0/0	c0004	960	7	7	0	0	0	0	copy fasta	OR2S2	chr9	35952108	35963154
OR2S2_chr9_35952108_35963154	0/0	c0005	960	4	4	0	0	0	0	copy fasta	OR2S2	chr9	35952108	35963154
OR2S2_chr9_35952108_35963154	0/0	c0006	960	2	2	0	0	0	0	copy fasta	OR2S2	chr9	35952108	35963154
OR2S2_chr9_35952108_35963154	0/0	c0007	960	2	0	0	2	0	0	copy fasta	OR2S2	chr9	35952108	35963154
OR2S2_chr9_35952108_35963154	0/0	c0008	960	2	2	0	0	0	0	copy fasta	OR2S2	chr9	35952108	35963154
OR2S2_chr9_35952108_35963154	0/0	c0009	960	1	0	0	1	0	0	copy fasta	OR2S2	chr9	35952108	35963154
OR2S2_chr9_35952108_35963154	0/0	c0010	960	1	0	0	1	0	0	copy fasta	OR2S2	chr9	35952108	35963154
OR2S2_chr9_35952108_35963154	0/0	c0011	960	1	1	0	0	0	0	copy fasta	OR2S2	chr9	35952108	35963154
OR2S2_chr9_35952108_35963154	0/0	c0012	960	1	0	1	0	0	0	copy fasta	OR2S2	chr9	35952108	35963154
OR2S2_chr9_35952108_35963154	0/0	c0013	960	1	0	0	1	0	0	copy fasta	OR2S2	chr9	35952108	35963154
OR2S2_chr9_35952108_35963154	0/0	c0014	960	1	0	0	0	0	1	copy fasta	OR2S2	chr9	35952108	35963154
OR2T10_chr1_248585487_248602700	1/1	c0001	939	301	26	56	176	9	32	copy fasta	OR2T10	chr1	248585487	248602700
OR2T10_chr1_248585487_248602700	0/0	c0002	939	12	12	0	0	0	0	copy fasta	OR2T10	chr1	248585487	248602700
OR2T10_chr1_248585487_248602700	0/0	c0003	939	1	0	0	0	1	0	copy fasta	OR2T10	chr1	248585487	248602700
OR2T10_chr1_248585487_248602700	0/0	c0004	939	1	1	0	0	0	0	copy fasta	OR2T10	chr1	248585487	248602700
OR2T10_chr1_248585487_248602700	0/0	c0005	939	1	1	0	0	0	0	copy fasta	OR2T10	chr1	248585487	248602700
OR2T11_chr1_248618557_248640091	0/1	c0001	951	225	21	40	125	8	30	copy fasta	OR2T11	chr1	248618557	248640091
OR2T11_chr1_248618557_248640091	0/0	c0002	951	56	0	5	49	0	2	copy fasta	OR2T11	chr1	248618557	248640091
OR2T11_chr1_248618557_248640091	0/0	c0003	951	9	9	0	0	0	0	copy fasta	OR2T11	chr1	248618557	248640091
OR2T11_chr1_248618557_248640091	1/0	c0004	951	6	5	0	0	0	0	copy fasta	OR2T11	chr1	248618557	248640091
OR2T11_chr1_248618557_248640091	0/0	c0005	949	6	5	1	0	0	0	copy fasta	OR2T11	chr1	248618557	248640091
OR2T11_chr1_248618557_248640091	0/0	c0006	951	2	1	1	0	0	0	copy fasta	OR2T11	chr1	248618557	248640091
OR2T11_chr1_248618557_248640091	0/0	c0007	951	2	0	0	2	0	0	copy fasta	OR2T11	chr1	248618557	248640091
OR2T11_chr1_248618557_248640091	0/0	c0008	951	2	0	0	2	0	0	copy fasta	OR2T11	chr1	248618557	248640091
OR2T11_chr1_248618557_248640091	0/0	c0009	951	1	0	0	0	0	1	copy fasta	OR2T11	chr1	248618557	248640091
OR2T11_chr1_248618557_248640091	0/0	c0010	951	1	0	0	0	0	1	copy fasta	OR2T11	chr1	248618557	248640091
OR2T11_chr1_248618557_248640091	0/0	c0011	951	1	0	1	0	0	0	copy fasta	OR2T11	chr1	248618557	248640091
OR2T11_chr1_248618557_248640091	0/0	c0012	951	1	0	0	1	0	0	copy fasta	OR2T11	chr1	248618557	248640091
OR2T11_chr1_248618557_248640091	0/0	c0013	951	1	0	0	1	0	0	copy fasta	OR2T11	chr1	248618557	248640091
OR2T11_chr1_248618557_248640091	0/0	c0014	951	1	1	0	0	0	0	copy fasta	OR2T11	chr1	248618557	248640091
OR2T12_chr1_248285139_248308424	0/0	c0001	963	129	7	17	81	4	20	copy fasta	OR2T12	chr1	248285139	248308424
OR2T12_chr1_248285139_248308424	0/1	c0002	962	96	2	15	64	4	10	copy fasta	OR2T12	chr1	248285139	248308424
OR2T12_chr1_248285139_248308424	1/0	c0003	963	51	6	15	23	4	2	copy fasta	OR2T12	chr1	248285139	248308424
OR2T12_chr1_248285139_248308424	0/0	c0004	963	19	17	2	0	0	0	copy fasta	OR2T12	chr1	248285139	248308424
OR2T12_chr1_248285139_248308424	0/0	c0005	961	13	0	2	11	0	0	copy fasta	OR2T12	chr1	248285139	248308424
OR2T12_chr1_248285139_248308424	0/0	c0006	963	12	8	1	3	0	0	copy fasta	OR2T12	chr1	248285139	248308424
OR2T12_chr1_248285139_248308424	0/0	c0007	963	11	9	2	0	0	0	copy fasta	OR2T12	chr1	248285139	248308424
OR2T12_chr1_248285139_248308424	0/0	c0008	963	9	1	3	2	2	1	copy fasta	OR2T12	chr1	248285139	248308424
OR2T12_chr1_248285139_248308424	0/0	c0009	963	9	9	0	0	0	0	copy fasta	OR2T12	chr1	248285139	248308424
OR2T12_chr1_248285139_248308424	0/0	c0010	963	8	8	0	0	0	0	copy fasta	OR2T12	chr1	248285139	248308424