JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
OR2T12_chr1_248285139_248308424	0/0	c0011	963	8	8	0	0	0	0	copy fasta	OR2T12	chr1	248285139	248308424
OR2T12_chr1_248285139_248308424	0/0	c0012	963	7	6	1	0	0	0	copy fasta	OR2T12	chr1	248285139	248308424
OR2T12_chr1_248285139_248308424	0/0	c0013	963	4	4	0	0	0	0	copy fasta	OR2T12	chr1	248285139	248308424
OR2T12_chr1_248285139_248308424	0/0	c0014	963	4	0	4	0	0	0	copy fasta	OR2T12	chr1	248285139	248308424
OR2T12_chr1_248285139_248308424	0/0	c0015	963	3	3	0	0	0	0	copy fasta	OR2T12	chr1	248285139	248308424
OR2T12_chr1_248285139_248308424	0/0	c0016	960	3	3	0	0	0	0	copy fasta	OR2T12	chr1	248285139	248308424
OR2T12_chr1_248285139_248308424	0/0	c0017	963	2	2	0	0	0	0	copy fasta	OR2T12	chr1	248285139	248308424
OR2T12_chr1_248285139_248308424	0/0	c0018	963	2	2	0	0	0	0	copy fasta	OR2T12	chr1	248285139	248308424
OR2T12_chr1_248285139_248308424	0/0	c0019	963	1	0	1	0	0	0	copy fasta	OR2T12	chr1	248285139	248308424
OR2T12_chr1_248285139_248308424	0/0	c0020	963	1	1	0	0	0	0	copy fasta	OR2T12	chr1	248285139	248308424
OR2T12_chr1_248285139_248308424	0/0	c0021	963	1	0	0	1	0	0	copy fasta	OR2T12	chr1	248285139	248308424
OR2T12_chr1_248285139_248308424	0/0	c0022	963	1	0	1	0	0	0	copy fasta	OR2T12	chr1	248285139	248308424
OR2T12_chr1_248285139_248308424	0/0	c0023	963	1	0	0	0	0	1	copy fasta	OR2T12	chr1	248285139	248308424
OR2T12_chr1_248285139_248308424	0/0	c0024	963	1	0	0	1	0	0	copy fasta	OR2T12	chr1	248285139	248308424
OR2T12_chr1_248285139_248308424	0/0	c0025	963	1	1	0	0	0	0	copy fasta	OR2T12	chr1	248285139	248308424
OR2T12_chr1_248285139_248308424	0/0	c0026	963	1	0	1	0	0	0	copy fasta	OR2T12	chr1	248285139	248308424
OR2T12_chr1_248285139_248308424	0/0	c0027	960	1	1	0	0	0	0	copy fasta	OR2T12	chr1	248285139	248308424
OR2T12_chr1_248285139_248308424	0/0	c0028	960	1	1	0	0	0	0	copy fasta	OR2T12	chr1	248285139	248308424
OR2T12_chr1_248285139_248308424	0/0	c0029	960	1	0	1	0	0	0	copy fasta	OR2T12	chr1	248285139	248308424
OR2T12_chr1_248285139_248308424	0/0	c0030	963	1	1	0	0	0	0	copy fasta	OR2T12	chr1	248285139	248308424
OR2T12_chr1_248285139_248308424	0/0	c0031	962	1	0	0	1	0	0	copy fasta	OR2T12	chr1	248285139	248308424
OR2T12_chr1_248285139_248308424	0/0	c0032	962	1	0	0	0	0	1	copy fasta	OR2T12	chr1	248285139	248308424
OR2T12_chr1_248285139_248308424	0/0	c0033	962	1	0	0	0	0	1	copy fasta	OR2T12	chr1	248285139	248308424
OR2T12_chr1_248285139_248308424	0/0	c0034	962	1	0	0	1	0	0	copy fasta	OR2T12	chr1	248285139	248308424
OR2T1_chr1_248398048_248413020	0/0	c0001	957	232	71	56	80	7	18	copy fasta	OR2T1	chr1	248398048	248413020
OR2T1_chr1_248398048_248413020	0/0	c0002	957	13	13	0	0	0	0	copy fasta	OR2T1	chr1	248398048	248413020
OR2T1_chr1_248398048_248413020	0/0	c0003	957	8	7	1	0	0	0	copy fasta	OR2T1	chr1	248398048	248413020
OR2T1_chr1_248398048_248413020	0/0	c0004	957	4	0	0	4	0	0	copy fasta	OR2T1	chr1	248398048	248413020
OR2T1_chr1_248398048_248413020	0/0	c0005	957	2	2	0	0	0	0	copy fasta	OR2T1	chr1	248398048	248413020
OR2T1_chr1_248398048_248413020	0/0	c0006	957	1	0	0	1	0	0	copy fasta	OR2T1	chr1	248398048	248413020
OR2T1_chr1_248398048_248413020	0/0	c0007	957	1	1	0	0	0	0	copy fasta	OR2T1	chr1	248398048	248413020
OR2T1_chr1_248398048_248413020	0/0	c0008	957	1	0	0	1	0	0	copy fasta	OR2T1	chr1	248398048	248413020
OR2T1_chr1_248398048_248413020	0/0	c0009	957	1	0	0	0	1	0	copy fasta	OR2T1	chr1	248398048	248413020
OR2T1_chr1_248398048_248413020	0/0	c0010	957	1	0	1	0	0	0	copy fasta	OR2T1	chr1	248398048	248413020
OR2T1_chr1_248398048_248413020	0/0	c0011	957	1	1	0	0	0	0	copy fasta	OR2T1	chr1	248398048	248413020
OR2T1_chr1_248398048_248413020	0/0	c0012	957	1	1	0	0	0	0	copy fasta	OR2T1	chr1	248398048	248413020
OR2T27_chr1_248644838_248660528	0/0	c0001	954	123	4	33	51	8	27	copy fasta	OR2T27	chr1	248644838	248660528
OR2T27_chr1_248644838_248660528	0/0	c0002	951	34	0	4	28	1	1	copy fasta	OR2T27	chr1	248644838	248660528
OR2T27_chr1_248644838_248660528	0/0	c0003	954	31	0	2	26	0	3	copy fasta	OR2T27	chr1	248644838	248660528
OR2T27_chr1_248644838_248660528	0/1	c0004	954	23	0	7	8	3	4	copy fasta	OR2T27	chr1	248644838	248660528
OR2T27_chr1_248644838_248660528	0/0	c0005	954	12	0	3	8	0	1	copy fasta	OR2T27	chr1	248644838	248660528
OR2T27_chr1_248644838_248660528	0/0	c0006	954	12	1	0	9	0	2	copy fasta	OR2T27	chr1	248644838	248660528
OR2T27_chr1_248644838_248660528	0/0	c0007	951	10	0	0	10	0	0	copy fasta	OR2T27	chr1	248644838	248660528
OR2T27_chr1_248644838_248660528	0/0	c0008	952	10	0	4	3	2	1	copy fasta	OR2T27	chr1	248644838	248660528
OR2T27_chr1_248644838_248660528	0/0	c0009	954	7	0	1	6	0	0	copy fasta	OR2T27	chr1	248644838	248660528
OR2T27_chr1_248644838_248660528	0/0	c0010	955	6	6	0	0	0	0	copy fasta	OR2T27	chr1	248644838	248660528
OR2T27_chr1_248644838_248660528	0/0	c0011	954	6	3	2	0	0	1	copy fasta	OR2T27	chr1	248644838	248660528
OR2T27_chr1_248644838_248660528	0/0	c0012	954	5	0	1	4	0	0	copy fasta	OR2T27	chr1	248644838	248660528
OR2T27_chr1_248644838_248660528	0/0	c0013	954	5	4	1	0	0	0	copy fasta	OR2T27	chr1	248644838	248660528
OR2T27_chr1_248644838_248660528	1/0	c0014	954	4	3	0	0	0	0	copy fasta	OR2T27	chr1	248644838	248660528