JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ARFGEF3_chr6_138156939_138349663	0/0	c0011	6534	3	3	0	0	0	0	copy fasta	ARFGEF3	chr6	138156939	138349663
ARFGEF3_chr6_138156939_138349663	0/0	c0012	6534	3	0	0	0	0	3	copy fasta	ARFGEF3	chr6	138156939	138349663
ARFGEF3_chr6_138156939_138349663	0/0	c0013	6534	2	0	1	1	0	0	copy fasta	ARFGEF3	chr6	138156939	138349663
ARFGEF3_chr6_138156939_138349663	0/0	c0014	6534	2	0	0	1	0	1	copy fasta	ARFGEF3	chr6	138156939	138349663
ARFGEF3_chr6_138156939_138349663	0/0	c0015	6534	2	2	0	0	0	0	copy fasta	ARFGEF3	chr6	138156939	138349663
ARFGEF3_chr6_138156939_138349663	0/0	c0016	6534	1	1	0	0	0	0	copy fasta	ARFGEF3	chr6	138156939	138349663
ARFGEF3_chr6_138156939_138349663	0/0	c0017	6534	1	1	0	0	0	0	copy fasta	ARFGEF3	chr6	138156939	138349663
ARFGEF3_chr6_138156939_138349663	0/0	c0018	6534	1	1	0	0	0	0	copy fasta	ARFGEF3	chr6	138156939	138349663
ARFGEF3_chr6_138156939_138349663	0/0	c0019	6534	1	1	0	0	0	0	copy fasta	ARFGEF3	chr6	138156939	138349663
ARFGEF3_chr6_138156939_138349663	0/0	c0020	6534	1	1	0	0	0	0	copy fasta	ARFGEF3	chr6	138156939	138349663
ARFGEF3_chr6_138156939_138349663	0/0	c0021	6534	1	1	0	0	0	0	copy fasta	ARFGEF3	chr6	138156939	138349663
ARFGEF3_chr6_138156939_138349663	0/0	c0022	6534	1	0	0	1	0	0	copy fasta	ARFGEF3	chr6	138156939	138349663
ARFGEF3_chr6_138156939_138349663	0/0	c0023	6534	1	0	0	0	0	1	copy fasta	ARFGEF3	chr6	138156939	138349663
ARFGEF3_chr6_138156939_138349663	0/0	c0024	6534	1	0	1	0	0	0	copy fasta	ARFGEF3	chr6	138156939	138349663
ARFGEF3_chr6_138156939_138349663	0/0	c0025	6534	1	1	0	0	0	0	copy fasta	ARFGEF3	chr6	138156939	138349663
ARFGEF3_chr6_138156939_138349663	0/0	c0026	6534	1	1	0	0	0	0	copy fasta	ARFGEF3	chr6	138156939	138349663
ARFGEF3_chr6_138156939_138349663	0/0	c0027	6534	1	1	0	0	0	0	copy fasta	ARFGEF3	chr6	138156939	138349663
ARFGEF3_chr6_138156939_138349663	0/0	c0028	6534	1	0	0	1	0	0	copy fasta	ARFGEF3	chr6	138156939	138349663
ARFGEF3_chr6_138156939_138349663	0/0	c0029	6534	1	0	0	1	0	0	copy fasta	ARFGEF3	chr6	138156939	138349663
ARFGEF3_chr6_138156939_138349663	0/0	c0030	6534	1	0	1	0	0	0	copy fasta	ARFGEF3	chr6	138156939	138349663
ARFGEF3_chr6_138156939_138349663	0/1	c0031	6534	1	0	0	0	0	0	copy fasta	ARFGEF3	chr6	138156939	138349663
ARFGEF3_chr6_138156939_138349663	0/0	c0032	6534	1	1	0	0	0	0	copy fasta	ARFGEF3	chr6	138156939	138349663
ARFGEF3_chr6_138156939_138349663	0/0	c0033	6534	1	1	0	0	0	0	copy fasta	ARFGEF3	chr6	138156939	138349663
ARFGEF3_chr6_138156939_138349663	0/0	c0034	6534	1	1	0	0	0	0	copy fasta	ARFGEF3	chr6	138156939	138349663
ARFGEF3_chr6_138156939_138349663	0/0	c0035	6534	1	0	0	1	0	0	copy fasta	ARFGEF3	chr6	138156939	138349663
ARFGEF3_chr6_138156939_138349663	0/0	c0036	6534	1	0	1	0	0	0	copy fasta	ARFGEF3	chr6	138156939	138349663
ARFGEF3_chr6_138156939_138349663	0/0	c0037	6534	1	0	0	1	0	0	copy fasta	ARFGEF3	chr6	138156939	138349663
ARFGEF3_chr6_138156939_138349663	0/0	c0038	6534	1	1	0	0	0	0	copy fasta	ARFGEF3	chr6	138156939	138349663
ARFGEF3_chr6_138156939_138349663	0/0	c0039	6534	1	0	1	0	0	0	copy fasta	ARFGEF3	chr6	138156939	138349663
ARFGEF3_chr6_138156939_138349663	0/0	c0040	6534	1	1	0	0	0	0	copy fasta	ARFGEF3	chr6	138156939	138349663
ARFGEF3_chr6_138156939_138349663	0/0	c0041	6534	1	0	1	0	0	0	copy fasta	ARFGEF3	chr6	138156939	138349663
ARFGEF3_chr6_138156939_138349663	0/0	c0042	6534	1	0	0	1	0	0	copy fasta	ARFGEF3	chr6	138156939	138349663
ARFGEF3_chr6_138156939_138349663	0/0	c0043	6534	1	0	0	1	0	0	copy fasta	ARFGEF3	chr6	138156939	138349663
ARFIP1_chr4_152774954_152917357	1/1	c0001	1122	331	80	46	155	10	38	copy fasta	ARFIP1	chr4	152774954	152917357
ARFIP1_chr4_152774954_152917357	0/0	c0002	1122	6	6	0	0	0	0	copy fasta	ARFIP1	chr4	152774954	152917357
ARFIP1_chr4_152774954_152917357	0/0	c0003	1122	4	4	0	0	0	0	copy fasta	ARFIP1	chr4	152774954	152917357
ARFIP1_chr4_152774954_152917357	0/0	c0004	1122	1	0	0	1	0	0	copy fasta	ARFIP1	chr4	152774954	152917357
ARFIP2_chr11_6471519_6486331	1/1	c0001	1026	388	80	78	164	18	46	copy fasta	ARFIP2	chr11	6471519	6486331
ARFIP2_chr11_6471519_6486331	0/0	c0002	1026	11	10	1	0	0	0	copy fasta	ARFIP2	chr11	6471519	6486331
ARFIP2_chr11_6471519_6486331	0/0	c0003	1026	2	0	0	2	0	0	copy fasta	ARFIP2	chr11	6471519	6486331
ARFIP2_chr11_6471519_6486331	0/0	c0004	1026	1	0	1	0	0	0	copy fasta	ARFIP2	chr11	6471519	6486331
ARFRP1_chr20_63693647_63712976	1/1	c0001	606	203	70	43	50	10	28	copy fasta	ARFRP1	chr20	63693647	63712976
ARFRP1_chr20_63693647_63712976	0/0	c0002	606	88	1	7	70	2	8	copy fasta	ARFRP1	chr20	63693647	63712976
ARFRP1_chr20_63693647_63712976	0/0	c0003	606	5	5	0	0	0	0	copy fasta	ARFRP1	chr20	63693647	63712976
ARG1_chr6_131568226_131589329	1/1	c0001	969	402	91	62	195	16	36	copy fasta	ARG1	chr6	131568226	131589329
ARG1_chr6_131568226_131589329	0/0	c0002	969	7	0	2	0	0	5	copy fasta	ARG1	chr6	131568226	131589329
ARG1_chr6_131568226_131589329	0/0	c0003	969	5	0	0	5	0	0	copy fasta	ARG1	chr6	131568226	131589329
ARG1_chr6_131568226_131589329	0/0	c0004	969	2	0	0	2	0	0	copy fasta	ARG1	chr6	131568226	131589329
ARG1_chr6_131568226_131589329	0/0	c0005	969	2	0	0	2	0	0	copy fasta	ARG1	chr6	131568226	131589329
ARG1_chr6_131568226_131589329	0/0	c0006	969	1	1	0	0	0	0	copy fasta	ARG1	chr6	131568226	131589329