JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
OR2T27_chr1_248644838_248660528	0/0	c0015	955	4	4	0	0	0	0	copy fasta	OR2T27	chr1	248644838	248660528
OR2T27_chr1_248644838_248660528	0/0	c0016	951	4	4	0	0	0	0	copy fasta	OR2T27	chr1	248644838	248660528
OR2T27_chr1_248644838_248660528	0/0	c0017	954	3	3	0	0	0	0	copy fasta	OR2T27	chr1	248644838	248660528
OR2T27_chr1_248644838_248660528	0/0	c0018	955	3	3	0	0	0	0	copy fasta	OR2T27	chr1	248644838	248660528
OR2T27_chr1_248644838_248660528	0/0	c0019	954	3	3	0	0	0	0	copy fasta	OR2T27	chr1	248644838	248660528
OR2T27_chr1_248644838_248660528	0/0	c0020	954	3	3	0	0	0	0	copy fasta	OR2T27	chr1	248644838	248660528
OR2T27_chr1_248644838_248660528	0/0	c0021	954	3	2	1	0	0	0	copy fasta	OR2T27	chr1	248644838	248660528
OR2T27_chr1_248644838_248660528	0/0	c0022	954	2	0	1	1	0	0	copy fasta	OR2T27	chr1	248644838	248660528
OR2T27_chr1_248644838_248660528	0/0	c0023	954	2	2	0	0	0	0	copy fasta	OR2T27	chr1	248644838	248660528
OR2T27_chr1_248644838_248660528	0/0	c0024	954	2	2	0	0	0	0	copy fasta	OR2T27	chr1	248644838	248660528
OR2T27_chr1_248644838_248660528	0/0	c0025	951	2	0	0	2	0	0	copy fasta	OR2T27	chr1	248644838	248660528
OR2T27_chr1_248644838_248660528	0/0	c0026	955	2	1	1	0	0	0	copy fasta	OR2T27	chr1	248644838	248660528
OR2T27_chr1_248644838_248660528	0/0	c0027	951	2	0	0	2	0	0	copy fasta	OR2T27	chr1	248644838	248660528
OR2T27_chr1_248644838_248660528	0/0	c0028	954	2	1	0	0	1	0	copy fasta	OR2T27	chr1	248644838	248660528
OR2T27_chr1_248644838_248660528	0/0	c0029	954	2	0	2	0	0	0	copy fasta	OR2T27	chr1	248644838	248660528
OR2T27_chr1_248644838_248660528	0/0	c0030	954	2	2	0	0	0	0	copy fasta	OR2T27	chr1	248644838	248660528
OR2T27_chr1_248644838_248660528	0/0	c0031	954	2	0	0	1	0	1	copy fasta	OR2T27	chr1	248644838	248660528
OR2T27_chr1_248644838_248660528	0/0	c0032	952	2	0	0	0	0	2	copy fasta	OR2T27	chr1	248644838	248660528
OR2T27_chr1_248644838_248660528	0/0	c0033	952	2	1	0	0	0	1	copy fasta	OR2T27	chr1	248644838	248660528
OR2T27_chr1_248644838_248660528	0/0	c0034	954	1	1	0	0	0	0	copy fasta	OR2T27	chr1	248644838	248660528
OR2T27_chr1_248644838_248660528	0/0	c0035	954	1	0	1	0	0	0	copy fasta	OR2T27	chr1	248644838	248660528
OR2T27_chr1_248644838_248660528	0/0	c0036	951	1	1	0	0	0	0	copy fasta	OR2T27	chr1	248644838	248660528
OR2T27_chr1_248644838_248660528	0/0	c0037	954	1	1	0	0	0	0	copy fasta	OR2T27	chr1	248644838	248660528
OR2T27_chr1_248644838_248660528	0/0	c0038	954	1	0	1	0	0	0	copy fasta	OR2T27	chr1	248644838	248660528
OR2T27_chr1_248644838_248660528	0/0	c0039	954	1	0	0	0	0	1	copy fasta	OR2T27	chr1	248644838	248660528
OR2T27_chr1_248644838_248660528	0/0	c0040	954	1	0	1	0	0	0	copy fasta	OR2T27	chr1	248644838	248660528
OR2T27_chr1_248644838_248660528	0/0	c0041	954	1	1	0	0	0	0	copy fasta	OR2T27	chr1	248644838	248660528
OR2T27_chr1_248644838_248660528	0/0	c0042	954	1	1	0	0	0	0	copy fasta	OR2T27	chr1	248644838	248660528
OR2T27_chr1_248644838_248660528	0/0	c0043	954	1	0	1	0	0	0	copy fasta	OR2T27	chr1	248644838	248660528
OR2T27_chr1_248644838_248660528	0/0	c0044	954	1	0	1	0	0	0	copy fasta	OR2T27	chr1	248644838	248660528
OR2T27_chr1_248644838_248660528	0/0	c0045	954	1	1	0	0	0	0	copy fasta	OR2T27	chr1	248644838	248660528
OR2T27_chr1_248644838_248660528	0/0	c0046	951	1	0	0	1	0	0	copy fasta	OR2T27	chr1	248644838	248660528
OR2T27_chr1_248644838_248660528	0/0	c0047	954	1	0	0	1	0	0	copy fasta	OR2T27	chr1	248644838	248660528
OR2T27_chr1_248644838_248660528	0/0	c0048	951	1	0	0	1	0	0	copy fasta	OR2T27	chr1	248644838	248660528
OR2T27_chr1_248644838_248660528	0/0	c0049	954	1	0	0	1	0	0	copy fasta	OR2T27	chr1	248644838	248660528
OR2T27_chr1_248644838_248660528	0/0	c0050	954	1	1	0	0	0	0	copy fasta	OR2T27	chr1	248644838	248660528
OR2T27_chr1_248644838_248660528	0/0	c0051	955	1	1	0	0	0	0	copy fasta	OR2T27	chr1	248644838	248660528
OR2T27_chr1_248644838_248660528	0/0	c0052	954	1	1	0	0	0	0	copy fasta	OR2T27	chr1	248644838	248660528
OR2T27_chr1_248644838_248660528	0/0	c0053	954	1	0	0	1	0	0	copy fasta	OR2T27	chr1	248644838	248660528
OR2T27_chr1_248644838_248660528	0/0	c0054	954	1	0	0	1	0	0	copy fasta	OR2T27	chr1	248644838	248660528
OR2T27_chr1_248644838_248660528	0/0	c0055	952	1	1	0	0	0	0	copy fasta	OR2T27	chr1	248644838	248660528
OR2T27_chr1_248644838_248660528	0/0	c0056	951	1	0	0	1	0	0	copy fasta	OR2T27	chr1	248644838	248660528
OR2T27_chr1_248644838_248660528	0/0	c0057	951	1	1	0	0	0	0	copy fasta	OR2T27	chr1	248644838	248660528
OR2T27_chr1_248644838_248660528	0/0	c0058	951	1	0	1	0	0	0	copy fasta	OR2T27	chr1	248644838	248660528
OR2T27_chr1_248644838_248660528	0/0	c0059	954	1	0	0	0	0	1	copy fasta	OR2T27	chr1	248644838	248660528
OR2T27_chr1_248644838_248660528	0/0	c0060	954	1	0	0	1	0	0	copy fasta	OR2T27	chr1	248644838	248660528
OR2T27_chr1_248644838_248660528	0/0	c0061	951	1	1	0	0	0	0	copy fasta	OR2T27	chr1	248644838	248660528
OR2T27_chr1_248644838_248660528	0/0	c0062	951	1	1	0	0	0	0	copy fasta	OR2T27	chr1	248644838	248660528
OR2T27_chr1_248644838_248660528	0/0	c0063	954	1	1	0	0	0	0	copy fasta	OR2T27	chr1	248644838	248660528
OR2T27_chr1_248644838_248660528	0/0	c0064	954	1	0	0	1	0	0	copy fasta	OR2T27	chr1	248644838	248660528