JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
OR2T27_chr1_248644838_248660528	0/0	c0065	955	1	1	0	0	0	0	copy fasta	OR2T27	chr1	248644838	248660528
OR2T27_chr1_248644838_248660528	0/0	c0066	955	1	1	0	0	0	0	copy fasta	OR2T27	chr1	248644838	248660528
OR2T27_chr1_248644838_248660528	0/0	c0067	952	1	1	0	0	0	0	copy fasta	OR2T27	chr1	248644838	248660528
OR2T27_chr1_248644838_248660528	0/0	c0068	955	1	1	0	0	0	0	copy fasta	OR2T27	chr1	248644838	248660528
OR2T27_chr1_248644838_248660528	0/0	c0069	954	1	0	0	1	0	0	copy fasta	OR2T27	chr1	248644838	248660528
OR2T27_chr1_248644838_248660528	0/0	c0070	954	1	0	0	0	1	0	copy fasta	OR2T27	chr1	248644838	248660528
OR2T27_chr1_248644838_248660528	0/0	c0071	954	1	0	0	0	0	1	copy fasta	OR2T27	chr1	248644838	248660528
OR2T27_chr1_248644838_248660528	0/0	c0072	954	1	1	0	0	0	0	copy fasta	OR2T27	chr1	248644838	248660528
OR2T27_chr1_248644838_248660528	0/0	c0073	951	1	1	0	0	0	0	copy fasta	OR2T27	chr1	248644838	248660528
OR2T27_chr1_248644838_248660528	0/0	c0074	954	1	1	0	0	0	0	copy fasta	OR2T27	chr1	248644838	248660528
OR2T27_chr1_248644838_248660528	0/0	c0075	954	1	0	0	0	0	1	copy fasta	OR2T27	chr1	248644838	248660528
OR2T27_chr1_248644838_248660528	0/0	c0076	954	1	1	0	0	0	0	copy fasta	OR2T27	chr1	248644838	248660528
OR2T27_chr1_248644838_248660528	0/0	c0077	954	1	1	0	0	0	0	copy fasta	OR2T27	chr1	248644838	248660528
OR2T27_chr1_248644838_248660528	0/0	c0078	952	1	0	0	1	0	0	copy fasta	OR2T27	chr1	248644838	248660528
OR2T27_chr1_248644838_248660528	0/0	c0079	952	1	0	0	1	0	0	copy fasta	OR2T27	chr1	248644838	248660528
OR2T27_chr1_248644838_248660528	0/0	c0080	952	1	0	0	1	0	0	copy fasta	OR2T27	chr1	248644838	248660528
OR2T27_chr1_248644838_248660528	0/0	c0081	949	1	0	1	0	0	0	copy fasta	OR2T27	chr1	248644838	248660528
OR2T27_chr1_248644838_248660528	0/0	c0082	953	1	1	0	0	0	0	copy fasta	OR2T27	chr1	248644838	248660528
OR2T29_chr1_248551912_248567772	0/1	c0001	948	168	8	49	79	10	21	copy fasta	OR2T29	chr1	248551912	248567772
OR2T29_chr1_248551912_248567772	0/0	c0002	948	87	5	6	64	0	12	copy fasta	OR2T29	chr1	248551912	248567772
OR2T29_chr1_248551912_248567772	0/0	c0003	948	11	6	1	3	0	1	copy fasta	OR2T29	chr1	248551912	248567772
OR2T29_chr1_248551912_248567772	0/0	c0004	948	6	2	1	3	0	0	copy fasta	OR2T29	chr1	248551912	248567772
OR2T29_chr1_248551912_248567772	0/0	c0005	948	5	4	1	0	0	0	copy fasta	OR2T29	chr1	248551912	248567772
OR2T29_chr1_248551912_248567772	0/0	c0006	948	5	5	0	0	0	0	copy fasta	OR2T29	chr1	248551912	248567772
OR2T29_chr1_248551912_248567772	0/0	c0007	948	4	3	1	0	0	0	copy fasta	OR2T29	chr1	248551912	248567772
OR2T29_chr1_248551912_248567772	0/0	c0008	948	3	3	0	0	0	0	copy fasta	OR2T29	chr1	248551912	248567772
OR2T29_chr1_248551912_248567772	0/0	c0009	948	3	3	0	0	0	0	copy fasta	OR2T29	chr1	248551912	248567772
OR2T29_chr1_248551912_248567772	0/0	c0010	948	2	2	0	0	0	0	copy fasta	OR2T29	chr1	248551912	248567772
OR2T29_chr1_248551912_248567772	0/0	c0011	948	2	2	0	0	0	0	copy fasta	OR2T29	chr1	248551912	248567772
OR2T29_chr1_248551912_248567772	0/0	c0012	948	2	2	0	0	0	0	copy fasta	OR2T29	chr1	248551912	248567772
OR2T29_chr1_248551912_248567772	0/0	c0013	948	2	2	0	0	0	0	copy fasta	OR2T29	chr1	248551912	248567772
OR2T29_chr1_248551912_248567772	0/0	c0014	948	1	1	0	0	0	0	copy fasta	OR2T29	chr1	248551912	248567772
OR2T29_chr1_248551912_248567772	0/0	c0015	948	1	0	0	1	0	0	copy fasta	OR2T29	chr1	248551912	248567772
OR2T29_chr1_248551912_248567772	0/0	c0016	948	1	0	1	0	0	0	copy fasta	OR2T29	chr1	248551912	248567772
OR2T29_chr1_248551912_248567772	0/0	c0017	948	1	0	0	1	0	0	copy fasta	OR2T29	chr1	248551912	248567772
OR2T29_chr1_248551912_248567772	0/0	c0018	948	1	0	0	1	0	0	copy fasta	OR2T29	chr1	248551912	248567772
OR2T29_chr1_248551912_248567772	0/0	c0019	948	1	0	0	1	0	0	copy fasta	OR2T29	chr1	248551912	248567772
OR2T29_chr1_248551912_248567772	0/0	c0020	948	1	0	0	1	0	0	copy fasta	OR2T29	chr1	248551912	248567772
OR2T29_chr1_248551912_248567772	0/0	c0021	948	1	1	0	0	0	0	copy fasta	OR2T29	chr1	248551912	248567772
OR2T29_chr1_248551912_248567772	0/0	c0022	948	1	0	0	0	0	1	copy fasta	OR2T29	chr1	248551912	248567772
OR2T29_chr1_248551912_248567772	0/0	c0023	948	1	1	0	0	0	0	copy fasta	OR2T29	chr1	248551912	248567772
OR2T29_chr1_248551912_248567772	0/0	c0024	948	1	0	0	0	0	1	copy fasta	OR2T29	chr1	248551912	248567772
OR2T29_chr1_248551912_248567772	0/0	c0025	948	1	0	0	1	0	0	copy fasta	OR2T29	chr1	248551912	248567772
OR2T29_chr1_248551912_248567772	0/0	c0026	948	1	0	0	1	0	0	copy fasta	OR2T29	chr1	248551912	248567772
OR2T2_chr1_248440637_248460725	0/0	c0001	975	137	9	37	61	9	21	copy fasta	OR2T2	chr1	248440637	248460725
OR2T2_chr1_248440637_248460725	0/0	c0002	975	110	1	14	77	3	15	copy fasta	OR2T2	chr1	248440637	248460725
OR2T2_chr1_248440637_248460725	0/1	c0003	975	52	27	6	14	2	2	copy fasta	OR2T2	chr1	248440637	248460725
OR2T2_chr1_248440637_248460725	0/0	c0004	975	8	8	0	0	0	0	copy fasta	OR2T2	chr1	248440637	248460725
OR2T2_chr1_248440637_248460725	0/0	c0005	971	6	0	0	6	0	0	copy fasta	OR2T2	chr1	248440637	248460725
OR2T2_chr1_248440637_248460725	0/0	c0006	975	2	2	0	0	0	0	copy fasta	OR2T2	chr1	248440637	248460725