JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
OR2T2_chr1_248440637_248460725	0/0	c0007	975	2	0	2	0	0	0	copy fasta	OR2T2	chr1	248440637	248460725
OR2T2_chr1_248440637_248460725	0/0	c0008	975	1	1	0	0	0	0	copy fasta	OR2T2	chr1	248440637	248460725
OR2T2_chr1_248440637_248460725	0/0	c0009	975	1	1	0	0	0	0	copy fasta	OR2T2	chr1	248440637	248460725
OR2T2_chr1_248440637_248460725	0/0	c0010	975	1	0	1	0	0	0	copy fasta	OR2T2	chr1	248440637	248460725
OR2T2_chr1_248440637_248460725	0/0	c0011	975	1	0	1	0	0	0	copy fasta	OR2T2	chr1	248440637	248460725
OR2T2_chr1_248440637_248460725	0/0	c0012	975	1	1	0	0	0	0	copy fasta	OR2T2	chr1	248440637	248460725
OR2T2_chr1_248440637_248460725	0/0	c0013	975	1	0	0	1	0	0	copy fasta	OR2T2	chr1	248440637	248460725
OR2T2_chr1_248440637_248460725	0/0	c0014	975	1	0	0	1	0	0	copy fasta	OR2T2	chr1	248440637	248460725
OR2T2_chr1_248440637_248460725	0/0	c0015	975	1	0	0	1	0	0	copy fasta	OR2T2	chr1	248440637	248460725
OR2T2_chr1_248440637_248460725	0/0	c0016	975	1	0	0	1	0	0	copy fasta	OR2T2	chr1	248440637	248460725
OR2T2_chr1_248440637_248460725	0/0	c0017	975	1	0	1	0	0	0	copy fasta	OR2T2	chr1	248440637	248460725
OR2T2_chr1_248440637_248460725	0/0	c0018	1028	1	1	0	0	0	0	copy fasta	OR2T2	chr1	248440637	248460725
OR2T2_chr1_248440637_248460725	0/0	c0019	1028	1	1	0	0	0	0	copy fasta	OR2T2	chr1	248440637	248460725
OR2T33_chr1_248264917_248282976	0/0	c0001	963	166	30	24	94	2	16	copy fasta	OR2T33	chr1	248264917	248282976
OR2T33_chr1_248264917_248282976	0/1	c0002	963	89	1	14	62	2	9	copy fasta	OR2T33	chr1	248264917	248282976
OR2T33_chr1_248264917_248282976	1/0	c0003	963	58	6	15	31	4	1	copy fasta	OR2T33	chr1	248264917	248282976
OR2T33_chr1_248264917_248282976	0/0	c0004	963	18	14	1	3	0	0	copy fasta	OR2T33	chr1	248264917	248282976
OR2T33_chr1_248264917_248282976	0/0	c0005	963	16	9	3	0	2	2	copy fasta	OR2T33	chr1	248264917	248282976
OR2T33_chr1_248264917_248282976	0/0	c0006	963	5	5	0	0	0	0	copy fasta	OR2T33	chr1	248264917	248282976
OR2T33_chr1_248264917_248282976	0/0	c0007	963	5	4	1	0	0	0	copy fasta	OR2T33	chr1	248264917	248282976
OR2T33_chr1_248264917_248282976	0/0	c0008	964	4	0	0	4	0	0	copy fasta	OR2T33	chr1	248264917	248282976
OR2T33_chr1_248264917_248282976	0/0	c0009	963	4	2	1	1	0	0	copy fasta	OR2T33	chr1	248264917	248282976
OR2T33_chr1_248264917_248282976	0/0	c0010	963	3	3	0	0	0	0	copy fasta	OR2T33	chr1	248264917	248282976
OR2T33_chr1_248264917_248282976	0/0	c0011	963	3	3	0	0	0	0	copy fasta	OR2T33	chr1	248264917	248282976
OR2T33_chr1_248264917_248282976	0/0	c0012	963	3	3	0	0	0	0	copy fasta	OR2T33	chr1	248264917	248282976
OR2T33_chr1_248264917_248282976	0/0	c0013	963	3	0	0	3	0	0	copy fasta	OR2T33	chr1	248264917	248282976
OR2T33_chr1_248264917_248282976	0/0	c0014	963	3	3	0	0	0	0	copy fasta	OR2T33	chr1	248264917	248282976
OR2T33_chr1_248264917_248282976	0/0	c0015	963	2	2	0	0	0	0	copy fasta	OR2T33	chr1	248264917	248282976
OR2T33_chr1_248264917_248282976	0/0	c0016	963	2	1	1	0	0	0	copy fasta	OR2T33	chr1	248264917	248282976
OR2T33_chr1_248264917_248282976	0/0	c0017	963	1	1	0	0	0	0	copy fasta	OR2T33	chr1	248264917	248282976
OR2T33_chr1_248264917_248282976	0/0	c0018	963	1	1	0	0	0	0	copy fasta	OR2T33	chr1	248264917	248282976
OR2T33_chr1_248264917_248282976	0/0	c0019	963	1	0	1	0	0	0	copy fasta	OR2T33	chr1	248264917	248282976
OR2T33_chr1_248264917_248282976	0/0	c0020	963	1	1	0	0	0	0	copy fasta	OR2T33	chr1	248264917	248282976
OR2T33_chr1_248264917_248282976	0/0	c0021	963	1	1	0	0	0	0	copy fasta	OR2T33	chr1	248264917	248282976
OR2T33_chr1_248264917_248282976	0/0	c0022	963	1	0	1	0	0	0	copy fasta	OR2T33	chr1	248264917	248282976
OR2T33_chr1_248264917_248282976	0/0	c0023	963	1	0	1	0	0	0	copy fasta	OR2T33	chr1	248264917	248282976
OR2T33_chr1_248264917_248282976	0/0	c0024	963	1	1	0	0	0	0	copy fasta	OR2T33	chr1	248264917	248282976
OR2T33_chr1_248264917_248282976	0/0	c0025	963	1	1	0	0	0	0	copy fasta	OR2T33	chr1	248264917	248282976
OR2T33_chr1_248264917_248282976	0/0	c0026	964	1	0	1	0	0	0	copy fasta	OR2T33	chr1	248264917	248282976
OR2T33_chr1_248264917_248282976	0/0	c0027	963	1	1	0	0	0	0	copy fasta	OR2T33	chr1	248264917	248282976
OR2T33_chr1_248264917_248282976	0/0	c0028	963	1	0	0	0	0	1	copy fasta	OR2T33	chr1	248264917	248282976
OR2T33_chr1_248264917_248282976	0/0	c0029	963	1	0	0	0	0	1	copy fasta	OR2T33	chr1	248264917	248282976
OR2T33_chr1_248264917_248282976	0/0	c0030	963	1	1	0	0	0	0	copy fasta	OR2T33	chr1	248264917	248282976
OR2T33_chr1_248264917_248282976	0/0	c0031	963	1	1	0	0	0	0	copy fasta	OR2T33	chr1	248264917	248282976
OR2T33_chr1_248264917_248282976	0/0	c0032	963	1	0	0	1	0	0	copy fasta	OR2T33	chr1	248264917	248282976
OR2T33_chr1_248264917_248282976	0/0	c0033	963	1	1	0	0	0	0	copy fasta	OR2T33	chr1	248264917	248282976
OR2T33_chr1_248264917_248282976	0/0	c0034	963	1	1	0	0	0	0	copy fasta	OR2T33	chr1	248264917	248282976
OR2T33_chr1_248264917_248282976	0/0	c0035	963	1	1	0	0	0	0	copy fasta	OR2T33	chr1	248264917	248282976
OR2T33_chr1_248264917_248282976	0/0	c0036	963	1	0	1	0	0	0	copy fasta	OR2T33	chr1	248264917	248282976
OR2T33_chr1_248264917_248282976	0/0	c0037	963	1	0	0	1	0	0	copy fasta	OR2T33	chr1	248264917	248282976