JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
OR2T33_chr1_248264917_248282976	0/0	c0038	963	1	0	1	0	0	0	copy fasta	OR2T33	chr1	248264917	248282976
OR2T34_chr1_248568801_248579757	0/1	c0001	957	163	7	40	90	8	17	copy fasta	OR2T34	chr1	248568801	248579757
OR2T34_chr1_248568801_248579757	0/0	c0002	957	107	4	5	86	0	12	copy fasta	OR2T34	chr1	248568801	248579757
OR2T34_chr1_248568801_248579757	0/0	c0003	966	7	7	0	0	0	0	copy fasta	OR2T34	chr1	248568801	248579757
OR2T34_chr1_248568801_248579757	0/0	c0004	957	5	0	0	5	0	0	copy fasta	OR2T34	chr1	248568801	248579757
OR2T34_chr1_248568801_248579757	0/0	c0005	957	5	4	1	0	0	0	copy fasta	OR2T34	chr1	248568801	248579757
OR2T34_chr1_248568801_248579757	1/0	c0006	957	5	3	1	0	0	0	copy fasta	OR2T34	chr1	248568801	248579757
OR2T34_chr1_248568801_248579757	0/0	c0007	957	4	4	0	0	0	0	copy fasta	OR2T34	chr1	248568801	248579757
OR2T34_chr1_248568801_248579757	0/0	c0008	957	3	3	0	0	0	0	copy fasta	OR2T34	chr1	248568801	248579757
OR2T34_chr1_248568801_248579757	0/0	c0009	957	3	3	0	0	0	0	copy fasta	OR2T34	chr1	248568801	248579757
OR2T34_chr1_248568801_248579757	0/0	c0010	957	2	2	0	0	0	0	copy fasta	OR2T34	chr1	248568801	248579757
OR2T34_chr1_248568801_248579757	0/0	c0011	957	2	0	0	2	0	0	copy fasta	OR2T34	chr1	248568801	248579757
OR2T34_chr1_248568801_248579757	0/0	c0012	957	1	1	0	0	0	0	copy fasta	OR2T34	chr1	248568801	248579757
OR2T34_chr1_248568801_248579757	0/0	c0013	957	1	1	0	0	0	0	copy fasta	OR2T34	chr1	248568801	248579757
OR2T34_chr1_248568801_248579757	0/0	c0014	957	1	0	1	0	0	0	copy fasta	OR2T34	chr1	248568801	248579757
OR2T34_chr1_248568801_248579757	0/0	c0015	957	1	0	1	0	0	0	copy fasta	OR2T34	chr1	248568801	248579757
OR2T34_chr1_248568801_248579757	0/0	c0016	957	1	0	0	0	0	1	copy fasta	OR2T34	chr1	248568801	248579757
OR2T34_chr1_248568801_248579757	0/0	c0017	957	1	0	1	0	0	0	copy fasta	OR2T34	chr1	248568801	248579757
OR2T34_chr1_248568801_248579757	0/0	c0018	957	1	1	0	0	0	0	copy fasta	OR2T34	chr1	248568801	248579757
OR2T34_chr1_248568801_248579757	0/0	c0019	957	1	0	0	1	0	0	copy fasta	OR2T34	chr1	248568801	248579757
OR2T35_chr1_248631356_248650278	0/0	c0001	970	268	17	52	152	10	37	copy fasta	OR2T35	chr1	248631356	248650278
OR2T35_chr1_248631356_248650278	0/0	c0002	970	5	0	0	5	0	0	copy fasta	OR2T35	chr1	248631356	248650278
OR2T35_chr1_248631356_248650278	0/0	c0003	970	5	5	0	0	0	0	copy fasta	OR2T35	chr1	248631356	248650278
OR2T35_chr1_248631356_248650278	0/0	c0004	977	4	4	0	0	0	0	copy fasta	OR2T35	chr1	248631356	248650278
OR2T35_chr1_248631356_248650278	0/0	c0005	970	3	0	0	3	0	0	copy fasta	OR2T35	chr1	248631356	248650278
OR2T35_chr1_248631356_248650278	0/0	c0006	970	3	1	2	0	0	0	copy fasta	OR2T35	chr1	248631356	248650278
OR2T35_chr1_248631356_248650278	0/0	c0007	966	3	2	1	0	0	0	copy fasta	OR2T35	chr1	248631356	248650278
OR2T35_chr1_248631356_248650278	0/0	c0008	972	2	2	0	0	0	0	copy fasta	OR2T35	chr1	248631356	248650278
OR2T35_chr1_248631356_248650278	0/0	c0009	970	2	2	0	0	0	0	copy fasta	OR2T35	chr1	248631356	248650278
OR2T35_chr1_248631356_248650278	0/0	c0010	964	2	2	0	0	0	0	copy fasta	OR2T35	chr1	248631356	248650278
OR2T35_chr1_248631356_248650278	1/0	c0011	972	2	1	0	0	0	0	copy fasta	OR2T35	chr1	248631356	248650278
OR2T35_chr1_248631356_248650278	0/0	c0012	972	2	2	0	0	0	0	copy fasta	OR2T35	chr1	248631356	248650278
OR2T35_chr1_248631356_248650278	0/0	c0013	970	1	0	0	1	0	0	copy fasta	OR2T35	chr1	248631356	248650278
OR2T35_chr1_248631356_248650278	0/0	c0014	970	1	0	1	0	0	0	copy fasta	OR2T35	chr1	248631356	248650278
OR2T35_chr1_248631356_248650278	0/0	c0015	970	1	0	0	1	0	0	copy fasta	OR2T35	chr1	248631356	248650278
OR2T35_chr1_248631356_248650278	0/0	c0016	970	1	0	0	1	0	0	copy fasta	OR2T35	chr1	248631356	248650278
OR2T35_chr1_248631356_248650278	0/0	c0017	970	1	1	0	0	0	0	copy fasta	OR2T35	chr1	248631356	248650278
OR2T35_chr1_248631356_248650278	0/0	c0018	970	1	0	0	1	0	0	copy fasta	OR2T35	chr1	248631356	248650278
OR2T35_chr1_248631356_248650278	0/0	c0019	970	1	0	0	0	0	1	copy fasta	OR2T35	chr1	248631356	248650278
OR2T35_chr1_248631356_248650278	0/0	c0020	970	1	1	0	0	0	0	copy fasta	OR2T35	chr1	248631356	248650278
OR2T3_chr1_248468351_248479307	0/0	c0001	957	152	7	40	80	8	17	copy fasta	OR2T3	chr1	248468351	248479307
OR2T3_chr1_248468351_248479307	0/0	c0002	957	104	3	14	68	2	17	copy fasta	OR2T3	chr1	248468351	248479307
OR2T3_chr1_248468351_248479307	0/0	c0003	957	17	5	2	9	1	0	copy fasta	OR2T3	chr1	248468351	248479307
OR2T3_chr1_248468351_248479307	0/0	c0004	957	12	10	2	0	0	0	copy fasta	OR2T3	chr1	248468351	248479307
OR2T3_chr1_248468351_248479307	0/0	c0005	957	12	5	3	3	1	0	copy fasta	OR2T3	chr1	248468351	248479307
OR2T3_chr1_248468351_248479307	0/0	c0006	957	10	0	1	9	0	0	copy fasta	OR2T3	chr1	248468351	248479307
OR2T3_chr1_248468351_248479307	0/0	c0007	966	8	7	1	0	0	0	copy fasta	OR2T3	chr1	248468351	248479307
OR2T3_chr1_248468351_248479307	0/0	c0008	957	4	4	0	0	0	0	copy fasta	OR2T3	chr1	248468351	248479307
OR2T3_chr1_248468351_248479307	0/0	c0009	957	2	0	0	2	0	0	copy fasta	OR2T3	chr1	248468351	248479307
OR2T3_chr1_248468351_248479307	0/0	c0010	966	2	2	0	0	0	0	copy fasta	OR2T3	chr1	248468351	248479307