JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
OR2T3_chr1_248468351_248479307	0/0	c0011	957	1	0	1	0	0	0	copy fasta	OR2T3	chr1	248468351	248479307
OR2T3_chr1_248468351_248479307	0/0	c0012	957	1	1	0	0	0	0	copy fasta	OR2T3	chr1	248468351	248479307
OR2T3_chr1_248468351_248479307	0/0	c0013	957	1	0	0	1	0	0	copy fasta	OR2T3	chr1	248468351	248479307
OR2T3_chr1_248468351_248479307	0/0	c0014	957	1	0	1	0	0	0	copy fasta	OR2T3	chr1	248468351	248479307
OR2T3_chr1_248468351_248479307	0/0	c0015	957	1	1	0	0	0	0	copy fasta	OR2T3	chr1	248468351	248479307
OR2T3_chr1_248468351_248479307	0/0	c0016	957	1	1	0	0	0	0	copy fasta	OR2T3	chr1	248468351	248479307
OR2T3_chr1_248468351_248479307	0/0	c0017	957	1	1	0	0	0	0	copy fasta	OR2T3	chr1	248468351	248479307
OR2T3_chr1_248468351_248479307	0/0	c0018	957	1	0	0	1	0	0	copy fasta	OR2T3	chr1	248468351	248479307
OR2T3_chr1_248468351_248479307	0/0	c0019	957	1	0	0	1	0	0	copy fasta	OR2T3	chr1	248468351	248479307
OR2T3_chr1_248468351_248479307	0/0	c0020	957	1	0	1	0	0	0	copy fasta	OR2T3	chr1	248468351	248479307
OR2T3_chr1_248468351_248479307	0/0	c0021	957	1	0	0	1	0	0	copy fasta	OR2T3	chr1	248468351	248479307
OR2T3_chr1_248468351_248479307	0/0	c0022	957	1	0	0	1	0	0	copy fasta	OR2T3	chr1	248468351	248479307
OR2T3_chr1_248468351_248479307	0/0	c0023	966	1	1	0	0	0	0	copy fasta	OR2T3	chr1	248468351	248479307
OR2T4_chr1_248356665_248367627	0/0	c0001	962	155	30	32	65	8	20	copy fasta	OR2T4	chr1	248356665	248367627
OR2T4_chr1_248356665_248367627	0/0	c0002	963	110	18	14	65	4	9	copy fasta	OR2T4	chr1	248356665	248367627
OR2T4_chr1_248356665_248367627	0/0	c0003	910	102	1	15	71	4	11	copy fasta	OR2T4	chr1	248356665	248367627
OR2T4_chr1_248356665_248367627	0/0	c0004	963	19	18	1	0	0	0	copy fasta	OR2T4	chr1	248356665	248367627
OR2T4_chr1_248356665_248367627	0/0	c0005	965	15	13	2	0	0	0	copy fasta	OR2T4	chr1	248356665	248367627
OR2T4_chr1_248356665_248367627	0/0	c0006	961	14	12	2	0	0	0	copy fasta	OR2T4	chr1	248356665	248367627
OR2T4_chr1_248356665_248367627	0/0	c0007	910	3	0	0	3	0	0	copy fasta	OR2T4	chr1	248356665	248367627
OR2T4_chr1_248356665_248367627	0/0	c0008	963	2	2	0	0	0	0	copy fasta	OR2T4	chr1	248356665	248367627
OR2T4_chr1_248356665_248367627	0/0	c0009	910	2	0	0	2	0	0	copy fasta	OR2T4	chr1	248356665	248367627
OR2T4_chr1_248356665_248367627	0/0	c0010	963	1	1	0	0	0	0	copy fasta	OR2T4	chr1	248356665	248367627
OR2T4_chr1_248356665_248367627	0/0	c0011	962	1	1	0	0	0	0	copy fasta	OR2T4	chr1	248356665	248367627
OR2T4_chr1_248356665_248367627	0/0	c0012	963	1	1	0	0	0	0	copy fasta	OR2T4	chr1	248356665	248367627
OR2T4_chr1_248356665_248367627	0/0	c0013	963	1	1	0	0	0	0	copy fasta	OR2T4	chr1	248356665	248367627
OR2T4_chr1_248356665_248367627	0/0	c0014	962	1	1	0	0	0	0	copy fasta	OR2T4	chr1	248356665	248367627
OR2T4_chr1_248356665_248367627	0/0	c0015	962	1	1	0	0	0	0	copy fasta	OR2T4	chr1	248356665	248367627
OR2T5_chr1_248483589_248496113	0/0	c0001	948	143	4	36	76	9	18	copy fasta	OR2T5	chr1	248483589	248496113
OR2T5_chr1_248483589_248496113	0/0	c0002	948	43	1	7	33	0	2	copy fasta	OR2T5	chr1	248483589	248496113
OR2T5_chr1_248483589_248496113	0/0	c0003	948	32	0	0	27	0	5	copy fasta	OR2T5	chr1	248483589	248496113
OR2T5_chr1_248483589_248496113	0/0	c0004	948	28	14	0	11	2	1	copy fasta	OR2T5	chr1	248483589	248496113
OR2T5_chr1_248483589_248496113	0/0	c0005	948	9	0	5	0	2	2	copy fasta	OR2T5	chr1	248483589	248496113
OR2T5_chr1_248483589_248496113	0/0	c0006	948	6	0	0	5	0	1	copy fasta	OR2T5	chr1	248483589	248496113
OR2T5_chr1_248483589_248496113	0/0	c0007	948	5	0	2	2	0	1	copy fasta	OR2T5	chr1	248483589	248496113
OR2T5_chr1_248483589_248496113	0/0	c0008	948	5	4	1	0	0	0	copy fasta	OR2T5	chr1	248483589	248496113
OR2T5_chr1_248483589_248496113	0/0	c0009	948	5	5	0	0	0	0	copy fasta	OR2T5	chr1	248483589	248496113
OR2T5_chr1_248483589_248496113	0/0	c0010	948	3	3	0	0	0	0	copy fasta	OR2T5	chr1	248483589	248496113
OR2T5_chr1_248483589_248496113	0/0	c0011	948	2	2	0	0	0	0	copy fasta	OR2T5	chr1	248483589	248496113
OR2T5_chr1_248483589_248496113	0/0	c0012	948	1	0	0	1	0	0	copy fasta	OR2T5	chr1	248483589	248496113
OR2T5_chr1_248483589_248496113	0/0	c0013	948	1	1	0	0	0	0	copy fasta	OR2T5	chr1	248483589	248496113
OR2T5_chr1_248483589_248496113	0/0	c0014	948	1	0	0	1	0	0	copy fasta	OR2T5	chr1	248483589	248496113
OR2T5_chr1_248483589_248496113	0/0	c0015	948	1	0	0	0	1	0	copy fasta	OR2T5	chr1	248483589	248496113
OR2T5_chr1_248483589_248496113	0/0	c0016	948	1	1	0	0	0	0	copy fasta	OR2T5	chr1	248483589	248496113
OR2T5_chr1_248483589_248496113	0/0	c0017	948	1	0	1	0	0	0	copy fasta	OR2T5	chr1	248483589	248496113
OR2T5_chr1_248483589_248496113	0/0	c0018	948	1	1	0	0	0	0	copy fasta	OR2T5	chr1	248483589	248496113
OR2T6_chr1_248370746_248396811	0/0	c0001	927	144	39	30	56	7	12	copy fasta	OR2T6	chr1	248370746	248396811
OR2T6_chr1_248370746_248396811	0/1	c0002	927	130	22	22	71	4	10	copy fasta	OR2T6	chr1	248370746	248396811
OR2T6_chr1_248370746_248396811	0/0	c0003	927	83	7	15	50	4	7	copy fasta	OR2T6	chr1	248370746	248396811
OR2T6_chr1_248370746_248396811	0/0	c0004	927	17	17	0	0	0	0	copy fasta	OR2T6	chr1	248370746	248396811