JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
OR2T6_chr1_248370746_248396811	0/0	c0005	927	6	5	1	0	0	0	copy fasta	OR2T6	chr1	248370746	248396811
OR2T6_chr1_248370746_248396811	0/0	c0006	927	4	0	1	0	1	2	copy fasta	OR2T6	chr1	248370746	248396811
OR2T6_chr1_248370746_248396811	0/0	c0007	927	4	4	0	0	0	0	copy fasta	OR2T6	chr1	248370746	248396811
OR2T6_chr1_248370746_248396811	0/0	c0008	927	3	0	0	3	0	0	copy fasta	OR2T6	chr1	248370746	248396811
OR2T6_chr1_248370746_248396811	0/0	c0009	927	3	0	0	3	0	0	copy fasta	OR2T6	chr1	248370746	248396811
OR2T6_chr1_248370746_248396811	0/0	c0010	927	2	1	1	0	0	0	copy fasta	OR2T6	chr1	248370746	248396811
OR2T6_chr1_248370746_248396811	0/0	c0011	927	1	1	0	0	0	0	copy fasta	OR2T6	chr1	248370746	248396811
OR2T6_chr1_248370746_248396811	0/0	c0012	927	1	0	1	0	0	0	copy fasta	OR2T6	chr1	248370746	248396811
OR2T6_chr1_248370746_248396811	0/0	c0013	927	1	1	0	0	0	0	copy fasta	OR2T6	chr1	248370746	248396811
OR2T6_chr1_248370746_248396811	0/0	c0014	927	1	0	1	0	0	0	copy fasta	OR2T6	chr1	248370746	248396811
OR2T6_chr1_248370746_248396811	0/0	c0015	927	1	0	0	0	0	1	copy fasta	OR2T6	chr1	248370746	248396811
OR2T6_chr1_248370746_248396811	0/0	c0016	927	1	0	0	1	0	0	copy fasta	OR2T6	chr1	248370746	248396811
OR2T6_chr1_248370746_248396811	0/0	c0017	927	1	1	0	0	0	0	copy fasta	OR2T6	chr1	248370746	248396811
OR2T8_chr1_247915252_247928152	0/0	c0001	939	114	8	32	52	9	13	copy fasta	OR2T8	chr1	247915252	247928152
OR2T8_chr1_247915252_247928152	0/0	c0002	939	79	5	13	45	1	15	copy fasta	OR2T8	chr1	247915252	247928152
OR2T8_chr1_247915252_247928152	0/0	c0003	939	41	0	0	41	0	0	copy fasta	OR2T8	chr1	247915252	247928152
OR2T8_chr1_247915252_247928152	0/0	c0004	939	30	3	16	0	5	6	copy fasta	OR2T8	chr1	247915252	247928152
OR2T8_chr1_247915252_247928152	0/0	c0005	939	16	0	0	16	0	0	copy fasta	OR2T8	chr1	247915252	247928152
OR2T8_chr1_247915252_247928152	0/0	c0006	939	10	0	0	5	0	5	copy fasta	OR2T8	chr1	247915252	247928152
OR2T8_chr1_247915252_247928152	0/0	c0007	939	10	10	0	0	0	0	copy fasta	OR2T8	chr1	247915252	247928152
OR2T8_chr1_247915252_247928152	0/0	c0008	939	9	8	1	0	0	0	copy fasta	OR2T8	chr1	247915252	247928152
OR2T8_chr1_247915252_247928152	0/0	c0009	939	8	8	0	0	0	0	copy fasta	OR2T8	chr1	247915252	247928152
OR2T8_chr1_247915252_247928152	0/0	c0010	939	7	0	0	7	0	0	copy fasta	OR2T8	chr1	247915252	247928152
OR2T8_chr1_247915252_247928152	0/0	c0011	939	7	0	0	7	0	0	copy fasta	OR2T8	chr1	247915252	247928152
OR2T8_chr1_247915252_247928152	0/0	c0012	939	7	5	2	0	0	0	copy fasta	OR2T8	chr1	247915252	247928152
OR2T8_chr1_247915252_247928152	0/0	c0013	939	7	0	1	6	0	0	copy fasta	OR2T8	chr1	247915252	247928152
OR2T8_chr1_247915252_247928152	0/0	c0014	939	5	4	1	0	0	0	copy fasta	OR2T8	chr1	247915252	247928152
OR2T8_chr1_247915252_247928152	0/0	c0015	939	4	4	0	0	0	0	copy fasta	OR2T8	chr1	247915252	247928152
OR2T8_chr1_247915252_247928152	0/0	c0016	939	4	3	1	0	0	0	copy fasta	OR2T8	chr1	247915252	247928152
OR2T8_chr1_247915252_247928152	0/0	c0017	939	4	2	2	0	0	0	copy fasta	OR2T8	chr1	247915252	247928152
OR2T8_chr1_247915252_247928152	0/0	c0018	939	4	4	0	0	0	0	copy fasta	OR2T8	chr1	247915252	247928152
OR2T8_chr1_247915252_247928152	0/0	c0019	939	4	4	0	0	0	0	copy fasta	OR2T8	chr1	247915252	247928152
OR2T8_chr1_247915252_247928152	0/0	c0020	939	3	0	3	0	0	0	copy fasta	OR2T8	chr1	247915252	247928152
OR2T8_chr1_247915252_247928152	0/0	c0021	939	3	2	1	0	0	0	copy fasta	OR2T8	chr1	247915252	247928152
OR2T8_chr1_247915252_247928152	0/0	c0022	939	3	1	0	2	0	0	copy fasta	OR2T8	chr1	247915252	247928152
OR2T8_chr1_247915252_247928152	0/0	c0023	939	3	0	0	3	0	0	copy fasta	OR2T8	chr1	247915252	247928152
OR2T8_chr1_247915252_247928152	0/0	c0024	940	3	3	0	0	0	0	copy fasta	OR2T8	chr1	247915252	247928152
OR2T8_chr1_247915252_247928152	0/0	c0025	939	2	0	0	1	0	1	copy fasta	OR2T8	chr1	247915252	247928152
OR2T8_chr1_247915252_247928152	0/0	c0026	939	2	2	0	0	0	0	copy fasta	OR2T8	chr1	247915252	247928152
OR2T8_chr1_247915252_247928152	0/0	c0027	939	2	0	0	2	0	0	copy fasta	OR2T8	chr1	247915252	247928152
OR2T8_chr1_247915252_247928152	0/0	c0028	939	2	2	0	0	0	0	copy fasta	OR2T8	chr1	247915252	247928152
OR2T8_chr1_247915252_247928152	0/0	c0029	939	2	2	0	0	0	0	copy fasta	OR2T8	chr1	247915252	247928152
OR2T8_chr1_247915252_247928152	0/0	c0030	939	1	1	0	0	0	0	copy fasta	OR2T8	chr1	247915252	247928152
OR2T8_chr1_247915252_247928152	0/0	c0031	939	1	1	0	0	0	0	copy fasta	OR2T8	chr1	247915252	247928152
OR2T8_chr1_247915252_247928152	0/0	c0032	939	1	0	0	1	0	0	copy fasta	OR2T8	chr1	247915252	247928152
OR2T8_chr1_247915252_247928152	0/0	c0033	939	1	0	0	1	0	0	copy fasta	OR2T8	chr1	247915252	247928152
OR2T8_chr1_247915252_247928152	0/0	c0034	939	1	0	0	1	0	0	copy fasta	OR2T8	chr1	247915252	247928152
OR2T8_chr1_247915252_247928152	0/0	c0035	939	1	0	0	1	0	0	copy fasta	OR2T8	chr1	247915252	247928152
OR2T8_chr1_247915252_247928152	0/0	c0036	939	1	0	1	0	0	0	copy fasta	OR2T8	chr1	247915252	247928152
OR2T8_chr1_247915252_247928152	0/1	c0037	939	1	0	0	0	0	0	copy fasta	OR2T8	chr1	247915252	247928152