JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
OR2T8_chr1_247915252_247928152	0/0	c0038	939	1	0	0	1	0	0	copy fasta	OR2T8	chr1	247915252	247928152
OR2T8_chr1_247915252_247928152	0/0	c0039	939	1	0	0	1	0	0	copy fasta	OR2T8	chr1	247915252	247928152
OR2T8_chr1_247915252_247928152	0/0	c0040	939	1	1	0	0	0	0	copy fasta	OR2T8	chr1	247915252	247928152
OR2T8_chr1_247915252_247928152	0/0	c0041	939	1	0	0	0	0	1	copy fasta	OR2T8	chr1	247915252	247928152
OR2T8_chr1_247915252_247928152	0/0	c0042	939	1	0	0	1	0	0	copy fasta	OR2T8	chr1	247915252	247928152
OR2T8_chr1_247915252_247928152	0/0	c0043	939	1	0	1	0	0	0	copy fasta	OR2T8	chr1	247915252	247928152
OR2T8_chr1_247915252_247928152	0/0	c0044	939	1	1	0	0	0	0	copy fasta	OR2T8	chr1	247915252	247928152
OR2T8_chr1_247915252_247928152	0/0	c0045	939	1	0	0	0	0	1	copy fasta	OR2T8	chr1	247915252	247928152
OR2T8_chr1_247915252_247928152	0/0	c0046	939	1	0	0	0	1	0	copy fasta	OR2T8	chr1	247915252	247928152
OR2T8_chr1_247915252_247928152	0/0	c0047	939	1	0	1	0	0	0	copy fasta	OR2T8	chr1	247915252	247928152
OR2T8_chr1_247915252_247928152	0/0	c0048	939	1	0	0	1	0	0	copy fasta	OR2T8	chr1	247915252	247928152
OR2T8_chr1_247915252_247928152	0/0	c0049	939	1	0	0	1	0	0	copy fasta	OR2T8	chr1	247915252	247928152
OR2T8_chr1_247915252_247928152	0/0	c0050	939	1	0	0	1	0	0	copy fasta	OR2T8	chr1	247915252	247928152
OR2T8_chr1_247915252_247928152	0/0	c0051	939	1	0	1	0	0	0	copy fasta	OR2T8	chr1	247915252	247928152
OR2T8_chr1_247915252_247928152	0/0	c0052	939	1	1	0	0	0	0	copy fasta	OR2T8	chr1	247915252	247928152
OR2T8_chr1_247915252_247928152	0/0	c0053	939	1	1	0	0	0	0	copy fasta	OR2T8	chr1	247915252	247928152
OR2T8_chr1_247915252_247928152	0/0	c0054	939	1	1	0	0	0	0	copy fasta	OR2T8	chr1	247915252	247928152
OR2T8_chr1_247915252_247928152	0/0	c0055	939	1	1	0	0	0	0	copy fasta	OR2T8	chr1	247915252	247928152
OR2T8_chr1_247915252_247928152	0/0	c0056	939	1	0	0	1	0	0	copy fasta	OR2T8	chr1	247915252	247928152
OR2T8_chr1_247915252_247928152	0/0	c0057	939	1	0	1	0	0	0	copy fasta	OR2T8	chr1	247915252	247928152
OR2T8_chr1_247915252_247928152	0/0	c0058	939	1	1	0	0	0	0	copy fasta	OR2T8	chr1	247915252	247928152
OR2T8_chr1_247915252_247928152	0/0	c0059	939	1	1	0	0	0	0	copy fasta	OR2T8	chr1	247915252	247928152
OR2T8_chr1_247915252_247928152	0/0	c0060	940	1	0	0	1	0	0	copy fasta	OR2T8	chr1	247915252	247928152
OR2T8_chr1_247915252_247928152	0/0	c0061	940	1	0	0	1	0	0	copy fasta	OR2T8	chr1	247915252	247928152
OR2T8_chr1_247915252_247928152	0/0	c0062	939	1	1	0	0	0	0	copy fasta	OR2T8	chr1	247915252	247928152
OR2T8_chr1_247915252_247928152	1/0	c0063	939	1	0	0	0	0	0	copy fasta	OR2T8	chr1	247915252	247928152
OR2T8_chr1_247915252_247928152	0/0	c0064	939	1	1	0	0	0	0	copy fasta	OR2T8	chr1	247915252	247928152
OR2V1_chr5_181118122_181136169	1/1	c0001	948	356	49	73	170	17	45	copy fasta	OR2V1	chr5	181118122	181136169
OR2V1_chr5_181118122_181136169	0/0	c0002	948	38	35	0	1	1	1	copy fasta	OR2V1	chr5	181118122	181136169
OR2V1_chr5_181118122_181136169	0/0	c0003	948	17	7	0	10	0	0	copy fasta	OR2V1	chr5	181118122	181136169
OR2V1_chr5_181118122_181136169	0/0	c0004	948	10	0	4	6	0	0	copy fasta	OR2V1	chr5	181118122	181136169
OR2V1_chr5_181118122_181136169	0/0	c0005	948	4	0	0	4	0	0	copy fasta	OR2V1	chr5	181118122	181136169
OR2V1_chr5_181118122_181136169	0/0	c0006	945	3	3	0	0	0	0	copy fasta	OR2V1	chr5	181118122	181136169
OR2V1_chr5_181118122_181136169	0/0	c0007	948	3	0	0	3	0	0	copy fasta	OR2V1	chr5	181118122	181136169
OR2V1_chr5_181118122_181136169	0/0	c0008	948	2	2	0	0	0	0	copy fasta	OR2V1	chr5	181118122	181136169
OR2V1_chr5_181118122_181136169	0/0	c0009	948	2	2	0	0	0	0	copy fasta	OR2V1	chr5	181118122	181136169
OR2V1_chr5_181118122_181136169	0/0	c0010	948	1	0	0	1	0	0	copy fasta	OR2V1	chr5	181118122	181136169
OR2V1_chr5_181118122_181136169	0/0	c0011	948	1	0	0	1	0	0	copy fasta	OR2V1	chr5	181118122	181136169
OR2V1_chr5_181118122_181136169	0/0	c0012	948	1	0	1	0	0	0	copy fasta	OR2V1	chr5	181118122	181136169
OR2V2_chr5_181142586_181164285	0/0	c0001	948	259	55	68	96	11	29	copy fasta	OR2V2	chr5	181142586	181164285
OR2V2_chr5_181142586_181164285	1/0	c0002	948	129	22	16	70	4	16	copy fasta	OR2V2	chr5	181142586	181164285
OR2V2_chr5_181142586_181164285	0/0	c0003	944	26	14	1	5	2	4	copy fasta	OR2V2	chr5	181142586	181164285
OR2V2_chr5_181142586_181164285	0/0	c0004	948	4	4	0	0	0	0	copy fasta	OR2V2	chr5	181142586	181164285
OR2V2_chr5_181142586_181164285	0/1	c0005	948	3	0	1	0	0	1	copy fasta	OR2V2	chr5	181142586	181164285
OR2V2_chr5_181142586_181164285	0/0	c0006	948	1	1	0	0	0	0	copy fasta	OR2V2	chr5	181142586	181164285
OR2V2_chr5_181142586_181164285	0/0	c0007	931	1	0	0	1	0	0	copy fasta	OR2V2	chr5	181142586	181164285
OR2V2_chr5_181142586_181164285	0/0	c0008	948	1	0	0	0	1	0	copy fasta	OR2V2	chr5	181142586	181164285
OR2W1_chr6_29039213_29050175	0/1	c0001	963	279	60	51	124	8	35	copy fasta	OR2W1	chr6	29039213	29050175
OR2W1_chr6_29039213_29050175	0/0	c0002	963	146	20	21	90	6	9	copy fasta	OR2W1	chr6	29039213	29050175
OR2W1_chr6_29039213_29050175	0/0	c0003	963	13	9	4	0	0	0	copy fasta	OR2W1	chr6	29039213	29050175