JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
OR2W1_chr6_29039213_29050175	0/0	c0004	963	2	2	0	0	0	0	copy fasta	OR2W1	chr6	29039213	29050175
OR2W1_chr6_29039213_29050175	0/0	c0005	963	1	0	0	1	0	0	copy fasta	OR2W1	chr6	29039213	29050175
OR2W1_chr6_29039213_29050175	0/0	c0006	963	1	1	0	0	0	0	copy fasta	OR2W1	chr6	29039213	29050175
OR2W1_chr6_29039213_29050175	0/0	c0007	963	1	0	0	1	0	0	copy fasta	OR2W1	chr6	29039213	29050175
OR2W3_chr1_247890587_247901531	0/1	c0001	945	104	7	12	66	3	15	copy fasta	OR2W3	chr1	247890587	247901531
OR2W3_chr1_247890587_247901531	1/0	c0002	945	64	22	12	25	3	1	copy fasta	OR2W3	chr1	247890587	247901531
OR2W3_chr1_247890587_247901531	0/0	c0003	945	49	0	6	36	0	7	copy fasta	OR2W3	chr1	247890587	247901531
OR2W3_chr1_247890587_247901531	0/0	c0004	945	39	19	3	17	0	0	copy fasta	OR2W3	chr1	247890587	247901531
OR2W3_chr1_247890587_247901531	0/0	c0005	946	33	7	10	8	1	7	copy fasta	OR2W3	chr1	247890587	247901531
OR2W3_chr1_247890587_247901531	0/0	c0006	945	17	1	10	2	2	2	copy fasta	OR2W3	chr1	247890587	247901531
OR2W3_chr1_247890587_247901531	0/0	c0007	945	13	3	2	8	0	0	copy fasta	OR2W3	chr1	247890587	247901531
OR2W3_chr1_247890587_247901531	0/0	c0008	945	9	2	2	0	0	5	copy fasta	OR2W3	chr1	247890587	247901531
OR2W3_chr1_247890587_247901531	0/0	c0009	945	8	0	4	1	2	1	copy fasta	OR2W3	chr1	247890587	247901531
OR2W3_chr1_247890587_247901531	0/0	c0010	945	7	3	3	0	1	0	copy fasta	OR2W3	chr1	247890587	247901531
OR2W3_chr1_247890587_247901531	0/0	c0011	945	5	0	2	2	0	1	copy fasta	OR2W3	chr1	247890587	247901531
OR2W3_chr1_247890587_247901531	0/0	c0012	942	5	0	3	0	1	1	copy fasta	OR2W3	chr1	247890587	247901531
OR2W3_chr1_247890587_247901531	0/0	c0013	945	4	0	3	1	0	0	copy fasta	OR2W3	chr1	247890587	247901531
OR2W3_chr1_247890587_247901531	0/0	c0014	945	3	2	1	0	0	0	copy fasta	OR2W3	chr1	247890587	247901531
OR2W3_chr1_247890587_247901531	0/0	c0015	945	3	3	0	0	0	0	copy fasta	OR2W3	chr1	247890587	247901531
OR2W3_chr1_247890587_247901531	0/0	c0016	945	3	0	0	3	0	0	copy fasta	OR2W3	chr1	247890587	247901531
OR2W3_chr1_247890587_247901531	0/0	c0017	945	2	2	0	0	0	0	copy fasta	OR2W3	chr1	247890587	247901531
OR2W3_chr1_247890587_247901531	0/0	c0018	945	2	1	1	0	0	0	copy fasta	OR2W3	chr1	247890587	247901531
OR2W3_chr1_247890587_247901531	0/0	c0019	945	2	1	1	0	0	0	copy fasta	OR2W3	chr1	247890587	247901531
OR2W3_chr1_247890587_247901531	0/0	c0020	945	1	0	1	0	0	0	copy fasta	OR2W3	chr1	247890587	247901531
OR2W3_chr1_247890587_247901531	0/0	c0021	945	1	1	0	0	0	0	copy fasta	OR2W3	chr1	247890587	247901531
OR2W3_chr1_247890587_247901531	0/0	c0022	945	1	1	0	0	0	0	copy fasta	OR2W3	chr1	247890587	247901531
OR2W3_chr1_247890587_247901531	0/0	c0023	945	1	1	0	0	0	0	copy fasta	OR2W3	chr1	247890587	247901531
OR2W3_chr1_247890587_247901531	0/0	c0024	945	1	1	0	0	0	0	copy fasta	OR2W3	chr1	247890587	247901531
OR2W3_chr1_247890587_247901531	0/0	c0025	945	1	0	1	0	0	0	copy fasta	OR2W3	chr1	247890587	247901531
OR2W3_chr1_247890587_247901531	0/0	c0026	946	1	1	0	0	0	0	copy fasta	OR2W3	chr1	247890587	247901531
OR2W3_chr1_247890587_247901531	0/0	c0027	945	1	0	0	0	0	1	copy fasta	OR2W3	chr1	247890587	247901531
OR2W3_chr1_247890587_247901531	0/0	c0028	946	1	0	1	0	0	0	copy fasta	OR2W3	chr1	247890587	247901531
OR2W3_chr1_247890587_247901531	0/0	c0029	945	1	0	0	1	0	0	copy fasta	OR2W3	chr1	247890587	247901531
OR2W3_chr1_247890587_247901531	0/0	c0030	945	1	0	0	0	0	1	copy fasta	OR2W3	chr1	247890587	247901531
OR2W3_chr1_247890587_247901531	0/0	c0031	945	1	0	0	0	1	0	copy fasta	OR2W3	chr1	247890587	247901531
OR2W3_chr1_247890587_247901531	0/0	c0032	945	1	1	0	0	0	0	copy fasta	OR2W3	chr1	247890587	247901531
OR2W3_chr1_247890587_247901531	0/0	c0033	945	1	1	0	0	0	0	copy fasta	OR2W3	chr1	247890587	247901531
OR2W3_chr1_247890587_247901531	0/0	c0034	945	1	0	0	1	0	0	copy fasta	OR2W3	chr1	247890587	247901531
OR2W3_chr1_247890587_247901531	0/0	c0035	945	1	0	0	1	0	0	copy fasta	OR2W3	chr1	247890587	247901531
OR2Y1_chr5_180734123_180745058	0/0	c0001	936	362	46	69	185	16	46	copy fasta	OR2Y1	chr5	180734123	180745058
OR2Y1_chr5_180734123_180745058	0/0	c0002	936	69	26	4	38	0	1	copy fasta	OR2Y1	chr5	180734123	180745058
OR2Y1_chr5_180734123_180745058	1/0	c0003	936	15	13	0	0	0	1	copy fasta	OR2Y1	chr5	180734123	180745058
OR2Y1_chr5_180734123_180745058	0/0	c0004	936	3	2	1	0	0	0	copy fasta	OR2Y1	chr5	180734123	180745058
OR2Y1_chr5_180734123_180745058	0/0	c0005	936	3	0	0	3	0	0	copy fasta	OR2Y1	chr5	180734123	180745058
OR2Y1_chr5_180734123_180745058	0/0	c0006	936	3	0	0	3	0	0	copy fasta	OR2Y1	chr5	180734123	180745058
OR2Y1_chr5_180734123_180745058	0/0	c0007	936	2	2	0	0	0	0	copy fasta	OR2Y1	chr5	180734123	180745058
OR2Y1_chr5_180734123_180745058	0/0	c0008	936	2	1	0	1	0	0	copy fasta	OR2Y1	chr5	180734123	180745058
OR2Y1_chr5_180734123_180745058	0/0	c0009	936	2	2	0	0	0	0	copy fasta	OR2Y1	chr5	180734123	180745058
OR2Y1_chr5_180734123_180745058	0/0	c0010	936	1	0	1	0	0	0	copy fasta	OR2Y1	chr5	180734123	180745058
OR2Y1_chr5_180734123_180745058	0/0	c0011	936	1	0	0	1	0	0	copy fasta	OR2Y1	chr5	180734123	180745058