JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
OR2Y1_chr5_180734123_180745058	0/0	c0012	936	1	0	0	0	0	1	copy fasta	OR2Y1	chr5	180734123	180745058
OR2Y1_chr5_180734123_180745058	0/0	c0013	936	1	0	0	1	0	0	copy fasta	OR2Y1	chr5	180734123	180745058
OR2Y1_chr5_180734123_180745058	0/0	c0014	936	1	1	0	0	0	0	copy fasta	OR2Y1	chr5	180734123	180745058
OR2Y1_chr5_180734123_180745058	0/0	c0015	936	1	0	0	1	0	0	copy fasta	OR2Y1	chr5	180734123	180745058
OR2Y1_chr5_180734123_180745058	0/0	c0016	936	1	0	0	1	0	0	copy fasta	OR2Y1	chr5	180734123	180745058
OR2Y1_chr5_180734123_180745058	0/0	c0017	936	1	0	1	0	0	0	copy fasta	OR2Y1	chr5	180734123	180745058
OR2Y1_chr5_180734123_180745058	0/0	c0018	936	1	1	0	0	0	0	copy fasta	OR2Y1	chr5	180734123	180745058
OR2Y1_chr5_180734123_180745058	0/1	c0019	936	1	0	0	0	0	0	copy fasta	OR2Y1	chr5	180734123	180745058
OR2Y1_chr5_180734123_180745058	0/0	c0020	936	1	0	0	0	0	1	copy fasta	OR2Y1	chr5	180734123	180745058
OR2Z1_chr19_8716634_8737160	1/1	c0001	945	263	80	50	102	10	19	copy fasta	OR2Z1	chr19	8716634	8737160
OR2Z1_chr19_8716634_8737160	0/0	c0002	945	156	3	26	100	4	23	copy fasta	OR2Z1	chr19	8716634	8737160
OR2Z1_chr19_8716634_8737160	0/0	c0003	945	7	7	0	0	0	0	copy fasta	OR2Z1	chr19	8716634	8737160
OR2Z1_chr19_8716634_8737160	0/0	c0004	945	4	4	0	0	0	0	copy fasta	OR2Z1	chr19	8716634	8737160
OR2Z1_chr19_8716634_8737160	0/0	c0005	945	3	0	1	0	2	0	copy fasta	OR2Z1	chr19	8716634	8737160
OR2Z1_chr19_8716634_8737160	0/0	c0006	945	1	0	0	1	0	0	copy fasta	OR2Z1	chr19	8716634	8737160
OR2Z1_chr19_8716634_8737160	0/0	c0007	945	1	1	0	0	0	0	copy fasta	OR2Z1	chr19	8716634	8737160
OR2Z1_chr19_8716634_8737160	0/0	c0008	945	1	1	0	0	0	0	copy fasta	OR2Z1	chr19	8716634	8737160
OR2Z1_chr19_8716634_8737160	0/0	c0009	945	1	0	1	0	0	0	copy fasta	OR2Z1	chr19	8716634	8737160
OR2Z1_chr19_8716634_8737160	0/0	c0010	945	1	0	0	1	0	0	copy fasta	OR2Z1	chr19	8716634	8737160
OR3A1_chr17_3286017_3303360	0/0	c0001	948	245	19	37	155	10	24	copy fasta	OR3A1	chr17	3286017	3303360
OR3A1_chr17_3286017_3303360	1/0	c0002	948	123	52	32	10	6	22	copy fasta	OR3A1	chr17	3286017	3303360
OR3A1_chr17_3286017_3303360	0/0	c0003	948	7	6	1	0	0	0	copy fasta	OR3A1	chr17	3286017	3303360
OR3A1_chr17_3286017_3303360	0/0	c0004	948	5	5	0	0	0	0	copy fasta	OR3A1	chr17	3286017	3303360
OR3A1_chr17_3286017_3303360	0/0	c0005	948	4	3	1	0	0	0	copy fasta	OR3A1	chr17	3286017	3303360
OR3A1_chr17_3286017_3303360	0/0	c0006	948	3	3	0	0	0	0	copy fasta	OR3A1	chr17	3286017	3303360
OR3A1_chr17_3286017_3303360	0/0	c0007	948	2	0	0	2	0	0	copy fasta	OR3A1	chr17	3286017	3303360
OR3A1_chr17_3286017_3303360	0/0	c0008	948	2	2	0	0	0	0	copy fasta	OR3A1	chr17	3286017	3303360
OR3A1_chr17_3286017_3303360	0/0	c0009	948	2	0	0	2	0	0	copy fasta	OR3A1	chr17	3286017	3303360
OR3A1_chr17_3286017_3303360	0/0	c0010	948	1	0	0	1	0	0	copy fasta	OR3A1	chr17	3286017	3303360
OR3A1_chr17_3286017_3303360	0/0	c0011	948	1	0	0	1	0	0	copy fasta	OR3A1	chr17	3286017	3303360
OR3A1_chr17_3286017_3303360	0/1	c0012	948	1	0	0	0	0	0	copy fasta	OR3A1	chr17	3286017	3303360
OR3A1_chr17_3286017_3303360	0/0	c0013	948	1	0	0	1	0	0	copy fasta	OR3A1	chr17	3286017	3303360
OR3A1_chr17_3286017_3303360	0/0	c0014	948	1	0	1	0	0	0	copy fasta	OR3A1	chr17	3286017	3303360
OR3A2_chr17_3271177_3391308	1/0	c0001	948	155	30	29	66	9	20	copy fasta	OR3A2	chr17	3271177	3391308
OR3A2_chr17_3271177_3391308	0/1	c0002	948	66	24	17	11	2	11	copy fasta	OR3A2	chr17	3271177	3391308
OR3A2_chr17_3271177_3391308	0/0	c0003	948	58	1	11	34	3	9	copy fasta	OR3A2	chr17	3271177	3391308
OR3A2_chr17_3271177_3391308	0/0	c0004	948	8	7	1	0	0	0	copy fasta	OR3A2	chr17	3271177	3391308
OR3A2_chr17_3271177_3391308	0/0	c0005	948	5	5	0	0	0	0	copy fasta	OR3A2	chr17	3271177	3391308
OR3A2_chr17_3271177_3391308	0/0	c0006	948	5	5	0	0	0	0	copy fasta	OR3A2	chr17	3271177	3391308
OR3A2_chr17_3271177_3391308	0/0	c0007	948	4	0	0	4	0	0	copy fasta	OR3A2	chr17	3271177	3391308
OR3A2_chr17_3271177_3391308	0/0	c0008	948	4	0	0	4	0	0	copy fasta	OR3A2	chr17	3271177	3391308
OR3A2_chr17_3271177_3391308	0/0	c0009	948	2	2	0	0	0	0	copy fasta	OR3A2	chr17	3271177	3391308
OR3A2_chr17_3271177_3391308	0/0	c0010	948	2	0	0	2	0	0	copy fasta	OR3A2	chr17	3271177	3391308
OR3A2_chr17_3271177_3391308	0/0	c0011	948	1	1	0	0	0	0	copy fasta	OR3A2	chr17	3271177	3391308
OR3A2_chr17_3271177_3391308	0/0	c0012	948	1	1	0	0	0	0	copy fasta	OR3A2	chr17	3271177	3391308
OR3A2_chr17_3271177_3391308	0/0	c0013	948	1	0	1	0	0	0	copy fasta	OR3A2	chr17	3271177	3391308
OR3A2_chr17_3271177_3391308	0/0	c0014	948	1	0	1	0	0	0	copy fasta	OR3A2	chr17	3271177	3391308
OR3A2_chr17_3271177_3391308	0/0	c0015	948	1	1	0	0	0	0	copy fasta	OR3A2	chr17	3271177	3391308
OR3A2_chr17_3271177_3391308	0/0	c0016	948	1	1	0	0	0	0	copy fasta	OR3A2	chr17	3271177	3391308
OR3A2_chr17_3271177_3391308	0/0	c0017	948	1	0	0	1	0	0	copy fasta	OR3A2	chr17	3271177	3391308