JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
OR3A2_chr17_3271177_3391308	0/0	c0018	948	1	0	0	0	0	1	copy fasta	OR3A2	chr17	3271177	3391308
OR3A2_chr17_3271177_3391308	0/0	c0019	948	1	0	0	0	0	1	copy fasta	OR3A2	chr17	3271177	3391308
OR3A3_chr17_3406370_3429070	0/0	c0001	948	160	17	28	91	4	20	copy fasta	OR3A3	chr17	3406370	3429070
OR3A3_chr17_3406370_3429070	0/0	c0002	948	113	25	29	34	6	19	copy fasta	OR3A3	chr17	3406370	3429070
OR3A3_chr17_3406370_3429070	0/0	c0003	948	85	4	13	57	3	8	copy fasta	OR3A3	chr17	3406370	3429070
OR3A3_chr17_3406370_3429070	0/1	c0004	948	45	26	2	16	0	0	copy fasta	OR3A3	chr17	3406370	3429070
OR3A3_chr17_3406370_3429070	0/0	c0005	948	14	9	3	0	1	1	copy fasta	OR3A3	chr17	3406370	3429070
OR3A3_chr17_3406370_3429070	0/0	c0006	948	5	4	1	0	0	0	copy fasta	OR3A3	chr17	3406370	3429070
OR3A3_chr17_3406370_3429070	0/0	c0007	948	5	5	0	0	0	0	copy fasta	OR3A3	chr17	3406370	3429070
OR3A3_chr17_3406370_3429070	0/0	c0008	948	3	0	0	3	0	0	copy fasta	OR3A3	chr17	3406370	3429070
OR3A3_chr17_3406370_3429070	0/0	c0009	948	2	2	0	0	0	0	copy fasta	OR3A3	chr17	3406370	3429070
OR3A3_chr17_3406370_3429070	0/0	c0010	948	1	1	0	0	0	0	copy fasta	OR3A3	chr17	3406370	3429070
OR3A3_chr17_3406370_3429070	0/0	c0011	948	1	0	0	1	0	0	copy fasta	OR3A3	chr17	3406370	3429070
OR3A3_chr17_3406370_3429070	0/0	c0012	948	1	0	0	1	0	0	copy fasta	OR3A3	chr17	3406370	3429070
OR3A3_chr17_3406370_3429070	1/0	c0013	948	1	0	0	0	0	0	copy fasta	OR3A3	chr17	3406370	3429070
OR3A3_chr17_3406370_3429070	0/0	c0014	948	1	0	0	1	0	0	copy fasta	OR3A3	chr17	3406370	3429070
OR3A3_chr17_3406370_3429070	0/0	c0015	948	1	1	0	0	0	0	copy fasta	OR3A3	chr17	3406370	3429070
OR3A3_chr17_3406370_3429070	0/0	c0016	948	1	1	0	0	0	0	copy fasta	OR3A3	chr17	3406370	3429070
OR3A3_chr17_3406370_3429070	0/0	c0017	948	1	1	0	0	0	0	copy fasta	OR3A3	chr17	3406370	3429070
OR4A15_chr11_55362974_55373918	0/0	c0001	945	428	88	75	206	15	44	copy fasta	OR4A15	chr11	55362974	55373918
OR4A15_chr11_55362974_55373918	0/0	c0002	945	5	0	0	5	0	0	copy fasta	OR4A15	chr11	55362974	55373918
OR4A15_chr11_55362974_55373918	0/0	c0003	945	5	1	0	0	0	4	copy fasta	OR4A15	chr11	55362974	55373918
OR4A15_chr11_55362974_55373918	0/0	c0004	945	4	0	0	4	0	0	copy fasta	OR4A15	chr11	55362974	55373918
OR4A15_chr11_55362974_55373918	0/0	c0005	945	4	3	1	0	0	0	copy fasta	OR4A15	chr11	55362974	55373918
OR4A15_chr11_55362974_55373918	0/0	c0006	945	3	1	1	0	1	0	copy fasta	OR4A15	chr11	55362974	55373918
OR4A15_chr11_55362974_55373918	0/0	c0007	945	2	1	0	1	0	0	copy fasta	OR4A15	chr11	55362974	55373918
OR4A15_chr11_55362974_55373918	0/0	c0008	945	1	1	0	0	0	0	copy fasta	OR4A15	chr11	55362974	55373918
OR4A15_chr11_55362974_55373918	0/0	c0009	945	1	0	0	0	1	0	copy fasta	OR4A15	chr11	55362974	55373918
OR4A15_chr11_55362974_55373918	0/0	c0010	945	1	0	0	1	0	0	copy fasta	OR4A15	chr11	55362974	55373918
OR4A15_chr11_55362974_55373918	0/0	c0011	945	1	0	1	0	0	0	copy fasta	OR4A15	chr11	55362974	55373918
OR4A15_chr11_55362974_55373918	0/0	c0012	945	1	1	0	0	0	0	copy fasta	OR4A15	chr11	55362974	55373918
OR4A15_chr11_55362974_55373918	0/0	c0013	945	1	0	0	0	1	0	copy fasta	OR4A15	chr11	55362974	55373918
OR4A15_chr11_55362974_55373918	0/0	c0014	945	1	0	0	1	0	0	copy fasta	OR4A15	chr11	55362974	55373918
OR4A16_chr11_55338201_55349187	1/1	c0001	987	216	58	29	97	9	21	copy fasta	OR4A16	chr11	55338201	55349187
OR4A16_chr11_55338201_55349187	0/0	c0002	987	187	22	44	97	5	19	copy fasta	OR4A16	chr11	55338201	55349187
OR4A16_chr11_55338201_55349187	0/0	c0003	987	11	9	1	0	1	0	copy fasta	OR4A16	chr11	55338201	55349187
OR4A16_chr11_55338201_55349187	0/0	c0004	987	5	0	0	5	0	0	copy fasta	OR4A16	chr11	55338201	55349187
OR4A16_chr11_55338201_55349187	0/0	c0005	987	5	4	1	0	0	0	copy fasta	OR4A16	chr11	55338201	55349187
OR4A16_chr11_55338201_55349187	0/0	c0006	987	3	0	2	0	1	0	copy fasta	OR4A16	chr11	55338201	55349187
OR4A16_chr11_55338201_55349187	0/0	c0007	987	1	1	0	0	0	0	copy fasta	OR4A16	chr11	55338201	55349187
OR4A16_chr11_55338201_55349187	0/0	c0008	987	1	0	1	0	0	0	copy fasta	OR4A16	chr11	55338201	55349187
OR4A16_chr11_55338201_55349187	0/0	c0009	987	1	0	0	1	0	0	copy fasta	OR4A16	chr11	55338201	55349187
OR4A16_chr11_55338201_55349187	0/0	c0010	987	1	0	0	1	0	0	copy fasta	OR4A16	chr11	55338201	55349187
OR4A16_chr11_55338201_55349187	0/0	c0011	987	1	0	0	1	0	0	copy fasta	OR4A16	chr11	55338201	55349187
OR4A16_chr11_55338201_55349187	0/0	c0012	987	1	0	0	0	0	1	copy fasta	OR4A16	chr11	55338201	55349187
OR4A16_chr11_55338201_55349187	0/0	c0013	987	1	0	0	0	0	1	copy fasta	OR4A16	chr11	55338201	55349187
OR4A47_chr11_48483793_48494722	1/1	c0001	930	226	50	34	113	5	22	copy fasta	OR4A47	chr11	48483793	48494722
OR4A47_chr11_48483793_48494722	0/0	c0002	930	176	38	36	83	9	10	copy fasta	OR4A47	chr11	48483793	48494722
OR4A47_chr11_48483793_48494722	0/0	c0003	930	4	4	0	0	0	0	copy fasta	OR4A47	chr11	48483793	48494722
OR4A47_chr11_48483793_48494722	0/0	c0004	930	3	3	0	0	0	0	copy fasta	OR4A47	chr11	48483793	48494722