JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
OR4A47_chr11_48483793_48494722	0/0	c0005	930	2	2	0	0	0	0	copy fasta	OR4A47	chr11	48483793	48494722
OR4A47_chr11_48483793_48494722	0/0	c0006	930	2	0	0	0	0	2	copy fasta	OR4A47	chr11	48483793	48494722
OR4A47_chr11_48483793_48494722	0/0	c0007	930	1	0	1	0	0	0	copy fasta	OR4A47	chr11	48483793	48494722
OR4A47_chr11_48483793_48494722	0/0	c0008	930	1	0	1	0	0	0	copy fasta	OR4A47	chr11	48483793	48494722
OR4A47_chr11_48483793_48494722	0/0	c0009	930	1	1	0	0	0	0	copy fasta	OR4A47	chr11	48483793	48494722
OR4A5_chr11_54701832_54712902	1/1	c0001	948	296	48	54	155	8	29	copy fasta	OR4A5	chr11	54701832	54712902
OR4A5_chr11_54701832_54712902	0/0	c0002	948	61	0	6	46	2	7	copy fasta	OR4A5	chr11	54701832	54712902
OR4A5_chr11_54701832_54712902	0/0	c0003	948	37	13	3	13	3	5	copy fasta	OR4A5	chr11	54701832	54712902
OR4A5_chr11_54701832_54712902	0/0	c0004	948	24	3	4	10	4	3	copy fasta	OR4A5	chr11	54701832	54712902
OR4A5_chr11_54701832_54712902	0/0	c0005	948	5	5	0	0	0	0	copy fasta	OR4A5	chr11	54701832	54712902
OR4A5_chr11_54701832_54712902	0/0	c0006	948	5	5	0	0	0	0	copy fasta	OR4A5	chr11	54701832	54712902
OR4A5_chr11_54701832_54712902	0/0	c0007	948	5	4	1	0	0	0	copy fasta	OR4A5	chr11	54701832	54712902
OR4A5_chr11_54701832_54712902	0/0	c0008	948	4	1	2	0	1	0	copy fasta	OR4A5	chr11	54701832	54712902
OR4A5_chr11_54701832_54712902	0/0	c0009	948	4	4	0	0	0	0	copy fasta	OR4A5	chr11	54701832	54712902
OR4A5_chr11_54701832_54712902	0/0	c0010	948	4	4	0	0	0	0	copy fasta	OR4A5	chr11	54701832	54712902
OR4A5_chr11_54701832_54712902	0/0	c0011	948	3	3	0	0	0	0	copy fasta	OR4A5	chr11	54701832	54712902
OR4A5_chr11_54701832_54712902	0/0	c0012	948	3	0	3	0	0	0	copy fasta	OR4A5	chr11	54701832	54712902
OR4A5_chr11_54701832_54712902	0/0	c0013	948	2	2	0	0	0	0	copy fasta	OR4A5	chr11	54701832	54712902
OR4A5_chr11_54701832_54712902	0/0	c0014	948	2	2	0	0	0	0	copy fasta	OR4A5	chr11	54701832	54712902
OR4A5_chr11_54701832_54712902	0/0	c0015	948	2	0	0	2	0	0	copy fasta	OR4A5	chr11	54701832	54712902
OR4A5_chr11_54701832_54712902	0/0	c0016	948	1	0	0	0	0	1	copy fasta	OR4A5	chr11	54701832	54712902
OR4A5_chr11_54701832_54712902	0/0	c0017	948	1	0	1	0	0	0	copy fasta	OR4A5	chr11	54701832	54712902
OR4A5_chr11_54701832_54712902	0/0	c0018	948	1	1	0	0	0	0	copy fasta	OR4A5	chr11	54701832	54712902
OR4A5_chr11_54701832_54712902	0/0	c0019	948	1	0	1	0	0	0	copy fasta	OR4A5	chr11	54701832	54712902
OR4A5_chr11_54701832_54712902	0/0	c0020	948	1	0	0	1	0	0	copy fasta	OR4A5	chr11	54701832	54712902
OR4A5_chr11_54701832_54712902	0/0	c0021	948	1	0	1	0	0	0	copy fasta	OR4A5	chr11	54701832	54712902
OR4A5_chr11_54701832_54712902	0/0	c0022	948	1	0	0	1	0	0	copy fasta	OR4A5	chr11	54701832	54712902
OR4A5_chr11_54701832_54712902	0/0	c0023	948	1	1	0	0	0	0	copy fasta	OR4A5	chr11	54701832	54712902
OR4A5_chr11_54701832_54712902	0/0	c0024	948	1	0	0	0	0	1	copy fasta	OR4A5	chr11	54701832	54712902
OR4B1_chr11_48211810_48222739	0/0	c0001	930	161	23	45	72	6	15	copy fasta	OR4B1	chr11	48211810	48222739
OR4B1_chr11_48211810_48222739	0/0	c0002	930	120	15	11	75	5	14	copy fasta	OR4B1	chr11	48211810	48222739
OR4B1_chr11_48211810_48222739	0/1	c0003	930	76	20	9	42	1	3	copy fasta	OR4B1	chr11	48211810	48222739
OR4B1_chr11_48211810_48222739	0/0	c0004	930	40	18	8	7	4	3	copy fasta	OR4B1	chr11	48211810	48222739
OR4B1_chr11_48211810_48222739	1/0	c0005	930	10	8	1	0	0	0	copy fasta	OR4B1	chr11	48211810	48222739
OR4B1_chr11_48211810_48222739	0/0	c0006	930	6	6	0	0	0	0	copy fasta	OR4B1	chr11	48211810	48222739
OR4B1_chr11_48211810_48222739	0/0	c0007	930	5	5	0	0	0	0	copy fasta	OR4B1	chr11	48211810	48222739
OR4B1_chr11_48211810_48222739	0/0	c0008	930	5	0	1	0	0	4	copy fasta	OR4B1	chr11	48211810	48222739
OR4B1_chr11_48211810_48222739	0/0	c0009	930	3	3	0	0	0	0	copy fasta	OR4B1	chr11	48211810	48222739
OR4B1_chr11_48211810_48222739	0/0	c0010	930	3	1	1	0	0	1	copy fasta	OR4B1	chr11	48211810	48222739
OR4B1_chr11_48211810_48222739	0/0	c0011	930	2	0	0	0	0	2	copy fasta	OR4B1	chr11	48211810	48222739
OR4B1_chr11_48211810_48222739	0/0	c0012	930	1	0	0	1	0	0	copy fasta	OR4B1	chr11	48211810	48222739
OR4B1_chr11_48211810_48222739	0/0	c0013	930	1	0	0	1	0	0	copy fasta	OR4B1	chr11	48211810	48222739
OR4B1_chr11_48211810_48222739	0/0	c0014	930	1	1	0	0	0	0	copy fasta	OR4B1	chr11	48211810	48222739
OR4B1_chr11_48211810_48222739	0/0	c0015	930	1	0	0	1	0	0	copy fasta	OR4B1	chr11	48211810	48222739
OR4B1_chr11_48211810_48222739	0/0	c0016	930	1	0	0	1	0	0	copy fasta	OR4B1	chr11	48211810	48222739
OR4C11_chr11_55597360_55612645	1/0	c0001	933	135	41	18	53	8	14	copy fasta	OR4C11	chr11	55597360	55612645
OR4C11_chr11_55597360_55612645	0/0	c0002	933	71	15	14	32	1	9	copy fasta	OR4C11	chr11	55597360	55612645
OR4C11_chr11_55597360_55612645	0/1	c0003	933	10	1	4	1	0	3	copy fasta	OR4C11	chr11	55597360	55612645
OR4C11_chr11_55597360_55612645	0/0	c0004	933	4	4	0	0	0	0	copy fasta	OR4C11	chr11	55597360	55612645
OR4C11_chr11_55597360_55612645	0/0	c0005	933	4	3	1	0	0	0	copy fasta	OR4C11	chr11	55597360	55612645