JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
OR4C11_chr11_55597360_55612645	0/0	c0006	933	3	1	1	0	1	0	copy fasta	OR4C11	chr11	55597360	55612645
OR4C11_chr11_55597360_55612645	0/0	c0007	933	3	3	0	0	0	0	copy fasta	OR4C11	chr11	55597360	55612645
OR4C11_chr11_55597360_55612645	0/0	c0008	933	3	3	0	0	0	0	copy fasta	OR4C11	chr11	55597360	55612645
OR4C11_chr11_55597360_55612645	0/0	c0009	933	2	2	0	0	0	0	copy fasta	OR4C11	chr11	55597360	55612645
OR4C11_chr11_55597360_55612645	0/0	c0010	933	2	2	0	0	0	0	copy fasta	OR4C11	chr11	55597360	55612645
OR4C11_chr11_55597360_55612645	0/0	c0011	933	1	1	0	0	0	0	copy fasta	OR4C11	chr11	55597360	55612645
OR4C12_chr11_49976473_49987535	0/0	c0001	930	212	38	43	103	8	20	copy fasta	OR4C12	chr11	49976473	49987535
OR4C12_chr11_49976473_49987535	1/1	c0002	930	206	58	25	92	10	19	copy fasta	OR4C12	chr11	49976473	49987535
OR4C12_chr11_49976473_49987535	0/0	c0003	930	1	0	0	0	0	1	copy fasta	OR4C12	chr11	49976473	49987535
OR4C12_chr11_49976473_49987535	0/0	c0004	930	1	1	0	0	0	0	copy fasta	OR4C12	chr11	49976473	49987535
OR4C12_chr11_49976473_49987535	0/0	c0005	930	1	0	0	1	0	0	copy fasta	OR4C12	chr11	49976473	49987535
OR4C12_chr11_49976473_49987535	0/0	c0006	930	1	1	0	0	0	0	copy fasta	OR4C12	chr11	49976473	49987535
OR4C13_chr11_49947391_49958419	0/0	c0001	930	292	65	58	127	10	32	copy fasta	OR4C13	chr11	49947391	49958419
OR4C13_chr11_49947391_49958419	0/0	c0002	930	79	19	10	40	4	6	copy fasta	OR4C13	chr11	49947391	49958419
OR4C13_chr11_49947391_49958419	0/0	c0003	930	49	2	6	37	1	3	copy fasta	OR4C13	chr11	49947391	49958419
OR4C13_chr11_49947391_49958419	0/0	c0004	930	7	7	0	0	0	0	copy fasta	OR4C13	chr11	49947391	49958419
OR4C13_chr11_49947391_49958419	0/0	c0005	930	4	0	4	0	0	0	copy fasta	OR4C13	chr11	49947391	49958419
OR4C13_chr11_49947391_49958419	0/0	c0006	930	3	3	0	0	0	0	copy fasta	OR4C13	chr11	49947391	49958419
OR4C13_chr11_49947391_49958419	0/0	c0007	930	2	0	0	0	0	2	copy fasta	OR4C13	chr11	49947391	49958419
OR4C13_chr11_49947391_49958419	0/0	c0008	930	1	0	0	1	0	0	copy fasta	OR4C13	chr11	49947391	49958419
OR4C13_chr11_49947391_49958419	0/0	c0009	930	1	1	0	0	0	0	copy fasta	OR4C13	chr11	49947391	49958419
OR4C13_chr11_49947391_49958419	0/0	c0010	930	1	0	0	0	0	1	copy fasta	OR4C13	chr11	49947391	49958419
OR4C13_chr11_49947391_49958419	0/0	c0011	930	1	0	0	1	0	0	copy fasta	OR4C13	chr11	49947391	49958419
OR4C13_chr11_49947391_49958419	0/0	c0012	930	1	0	0	1	0	0	copy fasta	OR4C13	chr11	49947391	49958419
OR4C13_chr11_49947391_49958419	1/0	c0013	930	1	0	0	0	0	0	copy fasta	OR4C13	chr11	49947391	49958419
OR4C13_chr11_49947391_49958419	0/0	c0014	930	1	0	0	0	1	0	copy fasta	OR4C13	chr11	49947391	49958419
OR4C13_chr11_49947391_49958419	0/0	c0015	930	1	1	0	0	0	0	copy fasta	OR4C13	chr11	49947391	49958419
OR4C13_chr11_49947391_49958419	0/0	c0016	930	1	0	0	1	0	0	copy fasta	OR4C13	chr11	49947391	49958419
OR4C15_chr11_55549469_55560419	1/1	c0001	951	121	49	17	40	5	8	copy fasta	OR4C15	chr11	55549469	55560419
OR4C15_chr11_55549469_55560419	0/0	c0002	951	116	9	25	67	5	10	copy fasta	OR4C15	chr11	55549469	55560419
OR4C15_chr11_55549469_55560419	0/0	c0003	951	96	8	13	58	4	13	copy fasta	OR4C15	chr11	55549469	55560419
OR4C15_chr11_55549469_55560419	0/0	c0004	951	92	16	20	43	1	12	copy fasta	OR4C15	chr11	55549469	55560419
OR4C15_chr11_55549469_55560419	0/0	c0005	951	6	0	0	6	0	0	copy fasta	OR4C15	chr11	55549469	55560419
OR4C15_chr11_55549469_55560419	0/0	c0006	926	5	5	0	0	0	0	copy fasta	OR4C15	chr11	55549469	55560419
OR4C15_chr11_55549469_55560419	0/0	c0007	926	3	3	0	0	0	0	copy fasta	OR4C15	chr11	55549469	55560419
OR4C15_chr11_55549469_55560419	0/0	c0008	951	3	1	1	0	1	0	copy fasta	OR4C15	chr11	55549469	55560419
OR4C15_chr11_55549469_55560419	0/0	c0009	951	2	0	1	1	0	0	copy fasta	OR4C15	chr11	55549469	55560419
OR4C15_chr11_55549469_55560419	0/0	c0010	951	2	2	0	0	0	0	copy fasta	OR4C15	chr11	55549469	55560419
OR4C15_chr11_55549469_55560419	0/0	c0011	951	1	1	0	0	0	0	copy fasta	OR4C15	chr11	55549469	55560419
OR4C15_chr11_55549469_55560419	0/0	c0012	951	1	0	0	1	0	0	copy fasta	OR4C15	chr11	55549469	55560419
OR4C15_chr11_55549469_55560419	0/0	c0013	951	1	1	0	0	0	0	copy fasta	OR4C15	chr11	55549469	55560419
OR4C15_chr11_55549469_55560419	0/0	c0014	951	1	0	0	0	0	1	copy fasta	OR4C15	chr11	55549469	55560419
OR4C15_chr11_55549469_55560419	0/0	c0015	951	1	0	0	0	0	1	copy fasta	OR4C15	chr11	55549469	55560419
OR4C15_chr11_55549469_55560419	0/0	c0016	951	1	0	0	1	0	0	copy fasta	OR4C15	chr11	55549469	55560419
OR4C15_chr11_55549469_55560419	0/0	c0017	951	1	0	1	0	0	0	copy fasta	OR4C15	chr11	55549469	55560419
OR4C15_chr11_55549469_55560419	0/0	c0018	951	1	0	0	0	0	1	copy fasta	OR4C15	chr11	55549469	55560419
OR4C15_chr11_55549469_55560419	0/0	c0019	951	1	1	0	0	0	0	copy fasta	OR4C15	chr11	55549469	55560419
OR4C15_chr11_55549469_55560419	0/0	c0020	951	1	0	0	1	0	0	copy fasta	OR4C15	chr11	55549469	55560419
OR4C16_chr11_55567128_55578060	0/1	c0001	933	172	30	23	89	7	22	copy fasta	OR4C16	chr11	55567128	55578060
OR4C16_chr11_55567128_55578060	0/0	c0002	933	110	9	26	63	2	10	copy fasta	OR4C16	chr11	55567128	55578060