JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
OR4C16_chr11_55567128_55578060	0/0	c0003	933	93	17	20	43	2	11	copy fasta	OR4C16	chr11	55567128	55578060
OR4C16_chr11_55567128_55578060	1/0	c0004	933	28	19	5	0	2	1	copy fasta	OR4C16	chr11	55567128	55578060
OR4C16_chr11_55567128_55578060	0/0	c0005	932	6	6	0	0	0	0	copy fasta	OR4C16	chr11	55567128	55578060
OR4C16_chr11_55567128_55578060	0/0	c0006	933	4	0	2	0	0	2	copy fasta	OR4C16	chr11	55567128	55578060
OR4C16_chr11_55567128_55578060	0/0	c0007	933	3	1	1	0	1	0	copy fasta	OR4C16	chr11	55567128	55578060
OR4C16_chr11_55567128_55578060	0/0	c0008	933	3	3	0	0	0	0	copy fasta	OR4C16	chr11	55567128	55578060
OR4C16_chr11_55567128_55578060	0/0	c0009	933	3	0	0	3	0	0	copy fasta	OR4C16	chr11	55567128	55578060
OR4C16_chr11_55567128_55578060	0/0	c0010	932	2	2	0	0	0	0	copy fasta	OR4C16	chr11	55567128	55578060
OR4C16_chr11_55567128_55578060	0/0	c0011	933	2	2	0	0	0	0	copy fasta	OR4C16	chr11	55567128	55578060
OR4C16_chr11_55567128_55578060	0/0	c0012	933	2	2	0	0	0	0	copy fasta	OR4C16	chr11	55567128	55578060
OR4C16_chr11_55567128_55578060	0/0	c0013	933	2	0	0	0	0	2	copy fasta	OR4C16	chr11	55567128	55578060
OR4C16_chr11_55567128_55578060	0/0	c0014	933	1	1	0	0	0	0	copy fasta	OR4C16	chr11	55567128	55578060
OR4C16_chr11_55567128_55578060	0/0	c0015	933	1	0	0	1	0	0	copy fasta	OR4C16	chr11	55567128	55578060
OR4C16_chr11_55567128_55578060	0/0	c0016	933	1	0	1	0	0	0	copy fasta	OR4C16	chr11	55567128	55578060
OR4C16_chr11_55567128_55578060	0/0	c0017	933	1	0	0	1	0	0	copy fasta	OR4C16	chr11	55567128	55578060
OR4C16_chr11_55567128_55578060	0/0	c0018	933	1	1	0	0	0	0	copy fasta	OR4C16	chr11	55567128	55578060
OR4C16_chr11_55567128_55578060	0/0	c0019	933	1	1	0	0	0	0	copy fasta	OR4C16	chr11	55567128	55578060
OR4C16_chr11_55567128_55578060	0/0	c0020	933	1	0	0	1	0	0	copy fasta	OR4C16	chr11	55567128	55578060
OR4C16_chr11_55567128_55578060	0/0	c0021	933	1	0	0	1	0	0	copy fasta	OR4C16	chr11	55567128	55578060
OR4C16_chr11_55567128_55578060	0/0	c0022	933	1	0	0	1	0	0	copy fasta	OR4C16	chr11	55567128	55578060
OR4C16_chr11_55567128_55578060	0/0	c0023	933	1	0	0	1	0	0	copy fasta	OR4C16	chr11	55567128	55578060
OR4C3_chr11_48319920_48330955	1/1	c0001	909	251	49	54	120	7	19	copy fasta	OR4C3	chr11	48319920	48330955
OR4C3_chr11_48319920_48330955	0/0	c0002	909	178	43	22	82	9	22	copy fasta	OR4C3	chr11	48319920	48330955
OR4C3_chr11_48319920_48330955	0/0	c0003	909	3	3	0	0	0	0	copy fasta	OR4C3	chr11	48319920	48330955
OR4C3_chr11_48319920_48330955	0/0	c0004	909	3	3	0	0	0	0	copy fasta	OR4C3	chr11	48319920	48330955
OR4C3_chr11_48319920_48330955	0/0	c0005	909	3	0	0	0	0	3	copy fasta	OR4C3	chr11	48319920	48330955
OR4C3_chr11_48319920_48330955	0/0	c0006	909	2	0	0	2	0	0	copy fasta	OR4C3	chr11	48319920	48330955
OR4C46_chr11_54598069_54608998	0/0	c0001	930	217	24	53	109	6	25	copy fasta	OR4C46	chr11	54598069	54608998
OR4C46_chr11_54598069_54608998	0/0	c0002	930	91	11	12	51	5	12	copy fasta	OR4C46	chr11	54598069	54608998
OR4C46_chr11_54598069_54608998	1/1	c0003	930	88	27	12	33	4	10	copy fasta	OR4C46	chr11	54598069	54608998
OR4C46_chr11_54598069_54608998	0/0	c0004	901	12	11	1	0	0	0	copy fasta	OR4C46	chr11	54598069	54608998
OR4C46_chr11_54598069_54608998	0/0	c0005	930	5	5	0	0	0	0	copy fasta	OR4C46	chr11	54598069	54608998
OR4C46_chr11_54598069_54608998	0/0	c0006	930	4	4	0	0	0	0	copy fasta	OR4C46	chr11	54598069	54608998
OR4C46_chr11_54598069_54608998	0/0	c0007	930	4	1	2	0	1	0	copy fasta	OR4C46	chr11	54598069	54608998
OR4C46_chr11_54598069_54608998	0/0	c0008	930	4	4	0	0	0	0	copy fasta	OR4C46	chr11	54598069	54608998
OR4C46_chr11_54598069_54608998	0/0	c0009	930	4	4	0	0	0	0	copy fasta	OR4C46	chr11	54598069	54608998
OR4C46_chr11_54598069_54608998	0/0	c0010	930	3	2	1	0	0	0	copy fasta	OR4C46	chr11	54598069	54608998
OR4C46_chr11_54598069_54608998	0/0	c0011	930	3	3	0	0	0	0	copy fasta	OR4C46	chr11	54598069	54608998
OR4C46_chr11_54598069_54608998	0/0	c0012	930	1	0	0	1	0	0	copy fasta	OR4C46	chr11	54598069	54608998
OR4C46_chr11_54598069_54608998	0/0	c0013	930	1	0	0	1	0	0	copy fasta	OR4C46	chr11	54598069	54608998
OR4C46_chr11_54598069_54608998	0/0	c0014	930	1	1	0	0	0	0	copy fasta	OR4C46	chr11	54598069	54608998
OR4C46_chr11_54598069_54608998	0/0	c0015	930	1	1	0	0	0	0	copy fasta	OR4C46	chr11	54598069	54608998
OR4C46_chr11_54598069_54608998	0/0	c0016	930	1	0	1	0	0	0	copy fasta	OR4C46	chr11	54598069	54608998
OR4C46_chr11_54598069_54608998	0/0	c0017	930	1	0	0	1	0	0	copy fasta	OR4C46	chr11	54598069	54608998
OR4C46_chr11_54598069_54608998	0/0	c0018	930	1	1	0	0	0	0	copy fasta	OR4C46	chr11	54598069	54608998
OR4C46_chr11_54598069_54608998	0/0	c0019	930	1	0	0	0	0	1	copy fasta	OR4C46	chr11	54598069	54608998
OR4C46_chr11_54598069_54608998	0/0	c0020	930	1	1	0	0	0	0	copy fasta	OR4C46	chr11	54598069	54608998
OR4C5_chr11_48360485_48371465	1/0	c0001	981	166	41	27	72	7	18	copy fasta	OR4C5	chr11	48360485	48371465
OR4C5_chr11_48360485_48371465	0/0	c0002	981	117	15	25	57	6	14	copy fasta	OR4C5	chr11	48360485	48371465
OR4C5_chr11_48360485_48371465	0/1	c0003	981	77	18	12	42	1	3	copy fasta	OR4C5	chr11	48360485	48371465