JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
OR4C5_chr11_48360485_48371465	0/0	c0004	981	7	0	0	7	0	0	copy fasta	OR4C5	chr11	48360485	48371465
OR4C5_chr11_48360485_48371465	0/0	c0005	981	6	0	0	6	0	0	copy fasta	OR4C5	chr11	48360485	48371465
OR4C5_chr11_48360485_48371465	0/0	c0006	981	5	5	0	0	0	0	copy fasta	OR4C5	chr11	48360485	48371465
OR4C5_chr11_48360485_48371465	0/0	c0007	981	5	4	1	0	0	0	copy fasta	OR4C5	chr11	48360485	48371465
OR4C5_chr11_48360485_48371465	0/0	c0008	981	4	4	0	0	0	0	copy fasta	OR4C5	chr11	48360485	48371465
OR4C5_chr11_48360485_48371465	0/0	c0009	981	3	3	0	0	0	0	copy fasta	OR4C5	chr11	48360485	48371465
OR4C5_chr11_48360485_48371465	0/0	c0010	981	1	0	0	1	0	0	copy fasta	OR4C5	chr11	48360485	48371465
OR4C5_chr11_48360485_48371465	0/0	c0011	981	1	0	1	0	0	0	copy fasta	OR4C5	chr11	48360485	48371465
OR4C5_chr11_48360485_48371465	0/0	c0012	981	1	0	0	1	0	0	copy fasta	OR4C5	chr11	48360485	48371465
OR4C5_chr11_48360485_48371465	0/0	c0013	981	1	0	0	0	0	1	copy fasta	OR4C5	chr11	48360485	48371465
OR4C6_chr11_55657201_55671096	1/1	c0001	930	209	69	36	72	10	20	copy fasta	OR4C6	chr11	55657201	55671096
OR4C6_chr11_55657201_55671096	0/0	c0002	930	4	4	0	0	0	0	copy fasta	OR4C6	chr11	55657201	55671096
OR4C6_chr11_55657201_55671096	0/0	c0003	930	2	0	0	2	0	0	copy fasta	OR4C6	chr11	55657201	55671096
OR4C6_chr11_55657201_55671096	0/0	c0004	930	1	1	0	0	0	0	copy fasta	OR4C6	chr11	55657201	55671096
OR4C6_chr11_55657201_55671096	0/0	c0005	930	1	1	0	0	0	0	copy fasta	OR4C6	chr11	55657201	55671096
OR4C6_chr11_55657201_55671096	0/0	c0006	930	1	1	0	0	0	0	copy fasta	OR4C6	chr11	55657201	55671096
OR4D10_chr11_59468315_59484361	1/1	c0001	936	381	74	73	184	11	37	copy fasta	OR4D10	chr11	59468315	59484361
OR4D10_chr11_59468315_59484361	0/0	c0002	936	41	17	11	10	0	3	copy fasta	OR4D10	chr11	59468315	59484361
OR4D10_chr11_59468315_59484361	0/0	c0003	936	3	3	0	0	0	0	copy fasta	OR4D10	chr11	59468315	59484361
OR4D10_chr11_59468315_59484361	0/0	c0004	936	2	2	0	0	0	0	copy fasta	OR4D10	chr11	59468315	59484361
OR4D10_chr11_59468315_59484361	0/0	c0005	936	1	1	0	0	0	0	copy fasta	OR4D10	chr11	59468315	59484361
OR4D10_chr11_59468315_59484361	0/0	c0006	936	1	1	0	0	0	0	copy fasta	OR4D10	chr11	59468315	59484361
OR4D10_chr11_59468315_59484361	0/0	c0007	936	1	0	0	0	1	0	copy fasta	OR4D10	chr11	59468315	59484361
OR4D11_chr11_59498576_59509511	1/1	c0001	936	257	56	43	118	14	24	copy fasta	OR4D11	chr11	59498576	59509511
OR4D11_chr11_59498576_59509511	0/0	c0002	936	113	25	21	55	0	12	copy fasta	OR4D11	chr11	59498576	59509511
OR4D11_chr11_59498576_59509511	0/0	c0003	936	10	9	1	0	0	0	copy fasta	OR4D11	chr11	59498576	59509511
OR4D11_chr11_59498576_59509511	0/0	c0004	936	4	4	0	0	0	0	copy fasta	OR4D11	chr11	59498576	59509511
OR4D11_chr11_59498576_59509511	0/0	c0005	936	1	0	0	1	0	0	copy fasta	OR4D11	chr11	59498576	59509511
OR4D11_chr11_59498576_59509511	0/0	c0006	936	1	0	0	1	0	0	copy fasta	OR4D11	chr11	59498576	59509511
OR4D11_chr11_59498576_59509511	0/0	c0007	936	1	0	1	0	0	0	copy fasta	OR4D11	chr11	59498576	59509511
OR4D11_chr11_59498576_59509511	0/0	c0008	936	1	0	0	1	0	0	copy fasta	OR4D11	chr11	59498576	59509511
OR4D1_chr17_58143384_58164585	1/0	c0001	933	247	42	49	113	13	29	copy fasta	OR4D1	chr17	58143384	58164585
OR4D1_chr17_58143384_58164585	0/1	c0002	933	95	33	14	29	3	15	copy fasta	OR4D1	chr17	58143384	58164585
OR4D1_chr17_58143384_58164585	0/0	c0003	933	14	11	3	0	0	0	copy fasta	OR4D1	chr17	58143384	58164585
OR4D1_chr17_58143384_58164585	0/0	c0004	934	6	3	3	0	0	0	copy fasta	OR4D1	chr17	58143384	58164585
OR4D1_chr17_58143384_58164585	0/0	c0005	933	5	0	3	0	1	1	copy fasta	OR4D1	chr17	58143384	58164585
OR4D1_chr17_58143384_58164585	0/0	c0006	933	4	4	0	0	0	0	copy fasta	OR4D1	chr17	58143384	58164585
OR4D1_chr17_58143384_58164585	0/0	c0007	933	3	0	2	0	1	0	copy fasta	OR4D1	chr17	58143384	58164585
OR4D1_chr17_58143384_58164585	0/0	c0008	933	2	0	2	0	0	0	copy fasta	OR4D1	chr17	58143384	58164585
OR4D1_chr17_58143384_58164585	0/0	c0009	933	1	1	0	0	0	0	copy fasta	OR4D1	chr17	58143384	58164585
OR4D1_chr17_58143384_58164585	0/0	c0010	933	1	0	0	0	0	1	copy fasta	OR4D1	chr17	58143384	58164585
OR4D2_chr17_58161982_58176116	1/1	c0001	924	248	40	53	110	15	28	copy fasta	OR4D2	chr17	58161982	58176116
OR4D2_chr17_58161982_58176116	0/0	c0002	924	91	27	11	44	2	7	copy fasta	OR4D2	chr17	58161982	58176116
OR4D2_chr17_58161982_58176116	0/0	c0003	924	28	17	3	0	1	7	copy fasta	OR4D2	chr17	58161982	58176116
OR4D2_chr17_58161982_58176116	0/0	c0004	924	7	6	1	0	0	0	copy fasta	OR4D2	chr17	58161982	58176116
OR4D2_chr17_58161982_58176116	0/0	c0005	924	4	3	1	0	0	0	copy fasta	OR4D2	chr17	58161982	58176116
OR4D2_chr17_58161982_58176116	0/0	c0006	924	4	0	0	4	0	0	copy fasta	OR4D2	chr17	58161982	58176116
OR4D2_chr17_58161982_58176116	0/0	c0007	924	2	2	0	0	0	0	copy fasta	OR4D2	chr17	58161982	58176116
OR4D2_chr17_58161982_58176116	0/0	c0008	924	1	1	0	0	0	0	copy fasta	OR4D2	chr17	58161982	58176116
OR4D2_chr17_58161982_58176116	0/0	c0009	924	1	0	1	0	0	0	copy fasta	OR4D2	chr17	58161982	58176116