JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
OR4D5_chr11_123934617_123945573	1/1	c0001	957	395	78	62	195	16	42	copy fasta	OR4D5	chr11	123934617	123945573
OR4D5_chr11_123934617_123945573	0/0	c0002	957	40	6	9	25	0	0	copy fasta	OR4D5	chr11	123934617	123945573
OR4D5_chr11_123934617_123945573	0/0	c0003	957	5	5	0	0	0	0	copy fasta	OR4D5	chr11	123934617	123945573
OR4D5_chr11_123934617_123945573	0/0	c0004	957	2	0	0	2	0	0	copy fasta	OR4D5	chr11	123934617	123945573
OR4D5_chr11_123934617_123945573	0/0	c0005	957	1	1	0	0	0	0	copy fasta	OR4D5	chr11	123934617	123945573
OR4D5_chr11_123934617_123945573	0/0	c0006	957	1	0	1	0	0	0	copy fasta	OR4D5	chr11	123934617	123945573
OR4D5_chr11_123934617_123945573	0/0	c0007	957	1	1	0	0	0	0	copy fasta	OR4D5	chr11	123934617	123945573
OR4D5_chr11_123934617_123945573	0/0	c0008	957	1	1	0	0	0	0	copy fasta	OR4D5	chr11	123934617	123945573
OR4D5_chr11_123934617_123945573	0/0	c0009	957	1	0	1	0	0	0	copy fasta	OR4D5	chr11	123934617	123945573
OR4D5_chr11_123934617_123945573	0/0	c0010	957	1	1	0	0	0	0	copy fasta	OR4D5	chr11	123934617	123945573
OR4D5_chr11_123934617_123945573	0/0	c0011	957	1	1	0	0	0	0	copy fasta	OR4D5	chr11	123934617	123945573
OR4D5_chr11_123934617_123945573	0/0	c0012	957	1	0	1	0	0	0	copy fasta	OR4D5	chr11	123934617	123945573
OR4D6_chr11_59451961_59462905	0/1	c0001	945	240	34	43	125	14	23	copy fasta	OR4D6	chr11	59451961	59462905
OR4D6_chr11_59451961_59462905	0/0	c0002	945	56	5	12	31	2	6	copy fasta	OR4D6	chr11	59451961	59462905
OR4D6_chr11_59451961_59462905	0/0	c0003	945	26	0	10	13	0	3	copy fasta	OR4D6	chr11	59451961	59462905
OR4D6_chr11_59451961_59462905	1/0	c0004	945	26	21	4	0	0	0	copy fasta	OR4D6	chr11	59451961	59462905
OR4D6_chr11_59451961_59462905	0/0	c0005	944	20	10	4	6	0	0	copy fasta	OR4D6	chr11	59451961	59462905
OR4D6_chr11_59451961_59462905	0/0	c0006	945	19	0	3	14	0	2	copy fasta	OR4D6	chr11	59451961	59462905
OR4D6_chr11_59451961_59462905	0/0	c0007	945	8	8	0	0	0	0	copy fasta	OR4D6	chr11	59451961	59462905
OR4D6_chr11_59451961_59462905	0/0	c0008	945	6	6	0	0	0	0	copy fasta	OR4D6	chr11	59451961	59462905
OR4D6_chr11_59451961_59462905	0/0	c0009	945	4	4	0	0	0	0	copy fasta	OR4D6	chr11	59451961	59462905
OR4D6_chr11_59451961_59462905	0/0	c0010	945	4	0	1	0	0	3	copy fasta	OR4D6	chr11	59451961	59462905
OR4D6_chr11_59451961_59462905	0/0	c0011	944	3	2	1	0	0	0	copy fasta	OR4D6	chr11	59451961	59462905
OR4D6_chr11_59451961_59462905	0/0	c0012	945	2	0	2	0	0	0	copy fasta	OR4D6	chr11	59451961	59462905
OR4D6_chr11_59451961_59462905	0/0	c0013	945	2	2	0	0	0	0	copy fasta	OR4D6	chr11	59451961	59462905
OR4D6_chr11_59451961_59462905	0/0	c0014	945	1	1	0	0	0	0	copy fasta	OR4D6	chr11	59451961	59462905
OR4D6_chr11_59451961_59462905	0/0	c0015	945	1	0	0	1	0	0	copy fasta	OR4D6	chr11	59451961	59462905
OR4D6_chr11_59451961_59462905	0/0	c0016	945	1	0	0	1	0	0	copy fasta	OR4D6	chr11	59451961	59462905
OR4D6_chr11_59451961_59462905	0/0	c0017	945	1	1	0	0	0	0	copy fasta	OR4D6	chr11	59451961	59462905
OR4D6_chr11_59451961_59462905	0/0	c0018	945	1	0	0	1	0	0	copy fasta	OR4D6	chr11	59451961	59462905
OR4D6_chr11_59451961_59462905	0/0	c0019	945	1	0	0	0	0	1	copy fasta	OR4D6	chr11	59451961	59462905
OR4D9_chr11_59506539_59525703	1/1	c0001	945	326	69	59	156	7	33	copy fasta	OR4D9	chr11	59506539	59525703
OR4D9_chr11_59506539_59525703	0/0	c0002	945	9	9	0	0	0	0	copy fasta	OR4D9	chr11	59506539	59525703
OR4D9_chr11_59506539_59525703	0/0	c0003	945	7	1	3	0	3	0	copy fasta	OR4D9	chr11	59506539	59525703
OR4D9_chr11_59506539_59525703	0/0	c0004	945	5	5	0	0	0	0	copy fasta	OR4D9	chr11	59506539	59525703
OR4D9_chr11_59506539_59525703	0/0	c0005	945	4	4	0	0	0	0	copy fasta	OR4D9	chr11	59506539	59525703
OR4D9_chr11_59506539_59525703	0/0	c0006	945	4	3	1	0	0	0	copy fasta	OR4D9	chr11	59506539	59525703
OR4D9_chr11_59506539_59525703	0/0	c0007	945	2	0	0	2	0	0	copy fasta	OR4D9	chr11	59506539	59525703
OR4D9_chr11_59506539_59525703	0/0	c0008	945	2	2	0	0	0	0	copy fasta	OR4D9	chr11	59506539	59525703
OR4D9_chr11_59506539_59525703	0/0	c0009	945	2	0	0	2	0	0	copy fasta	OR4D9	chr11	59506539	59525703
OR4D9_chr11_59506539_59525703	0/0	c0010	945	2	0	0	2	0	0	copy fasta	OR4D9	chr11	59506539	59525703
OR4D9_chr11_59506539_59525703	0/0	c0011	945	1	0	1	0	0	0	copy fasta	OR4D9	chr11	59506539	59525703
OR4D9_chr11_59506539_59525703	0/0	c0012	945	1	1	0	0	0	0	copy fasta	OR4D9	chr11	59506539	59525703
OR4D9_chr11_59506539_59525703	0/0	c0013	945	1	0	0	0	0	1	copy fasta	OR4D9	chr11	59506539	59525703
OR4E1_chr14_21662886_21678818	0/1	c0001	950	151	3	16	111	3	17	copy fasta	OR4E1	chr14	21662886	21678818
OR4E1_chr14_21662886_21678818	1/0	c0002	948	141	35	29	61	7	8	copy fasta	OR4E1	chr14	21662886	21678818
OR4E1_chr14_21662886_21678818	0/0	c0003	948	90	26	18	31	2	13	copy fasta	OR4E1	chr14	21662886	21678818
OR4E1_chr14_21662886_21678818	0/0	c0004	947	18	0	12	6	0	0	copy fasta	OR4E1	chr14	21662886	21678818
OR4E1_chr14_21662886_21678818	0/0	c0005	948	16	8	3	0	3	2	copy fasta	OR4E1	chr14	21662886	21678818
OR4E1_chr14_21662886_21678818	0/0	c0006	948	9	9	0	0	0	0	copy fasta	OR4E1	chr14	21662886	21678818