JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
OR4F6_chr15_101798509_101811887	0/0	c0011	939	1	1	0	0	0	0	copy fasta	OR4F6	chr15	101798509	101811887
OR4K13_chr14_20024399_20041038	1/1	c0001	915	292	72	42	141	6	29	copy fasta	OR4K13	chr14	20024399	20041038
OR4K13_chr14_20024399_20041038	0/0	c0002	915	107	6	19	64	7	11	copy fasta	OR4K13	chr14	20024399	20041038
OR4K13_chr14_20024399_20041038	0/0	c0003	915	34	5	15	5	1	8	copy fasta	OR4K13	chr14	20024399	20041038
OR4K13_chr14_20024399_20041038	0/0	c0004	915	5	5	0	0	0	0	copy fasta	OR4K13	chr14	20024399	20041038
OR4K13_chr14_20024399_20041038	0/0	c0005	915	5	0	0	5	0	0	copy fasta	OR4K13	chr14	20024399	20041038
OR4K13_chr14_20024399_20041038	0/0	c0006	915	4	4	0	0	0	0	copy fasta	OR4K13	chr14	20024399	20041038
OR4K13_chr14_20024399_20041038	0/0	c0007	915	3	3	0	0	0	0	copy fasta	OR4K13	chr14	20024399	20041038
OR4K13_chr14_20024399_20041038	0/0	c0008	915	3	0	0	3	0	0	copy fasta	OR4K13	chr14	20024399	20041038
OR4K13_chr14_20024399_20041038	0/0	c0009	915	3	3	0	0	0	0	copy fasta	OR4K13	chr14	20024399	20041038
OR4K13_chr14_20024399_20041038	0/0	c0010	915	2	0	0	2	0	0	copy fasta	OR4K13	chr14	20024399	20041038
OR4K13_chr14_20024399_20041038	0/0	c0011	915	1	0	0	1	0	0	copy fasta	OR4K13	chr14	20024399	20041038
OR4K13_chr14_20024399_20041038	0/0	c0012	915	1	1	0	0	0	0	copy fasta	OR4K13	chr14	20024399	20041038
OR4K13_chr14_20024399_20041038	0/0	c0013	915	1	0	0	0	0	1	copy fasta	OR4K13	chr14	20024399	20041038
OR4K13_chr14_20024399_20041038	0/0	c0014	915	1	0	0	1	0	0	copy fasta	OR4K13	chr14	20024399	20041038
OR4K13_chr14_20024399_20041038	0/0	c0015	915	1	1	0	0	0	0	copy fasta	OR4K13	chr14	20024399	20041038
OR4K13_chr14_20024399_20041038	0/0	c0016	915	1	0	1	0	0	0	copy fasta	OR4K13	chr14	20024399	20041038
OR4K13_chr14_20024399_20041038	0/0	c0017	915	1	0	1	0	0	0	copy fasta	OR4K13	chr14	20024399	20041038
OR4K13_chr14_20024399_20041038	0/0	c0018	915	1	0	0	0	0	1	copy fasta	OR4K13	chr14	20024399	20041038
OR4K14_chr14_20009143_20024307	0/0	c0001	933	296	36	53	165	11	31	copy fasta	OR4K14	chr14	20009143	20024307
OR4K14_chr14_20009143_20024307	0/0	c0002	933	46	3	6	31	1	5	copy fasta	OR4K14	chr14	20009143	20024307
OR4K14_chr14_20009143_20024307	1/0	c0003	933	44	17	12	2	2	10	copy fasta	OR4K14	chr14	20009143	20024307
OR4K14_chr14_20009143_20024307	0/0	c0004	933	29	26	3	0	0	0	copy fasta	OR4K14	chr14	20009143	20024307
OR4K14_chr14_20009143_20024307	0/0	c0005	933	8	8	0	0	0	0	copy fasta	OR4K14	chr14	20009143	20024307
OR4K14_chr14_20009143_20024307	0/0	c0006	933	3	3	0	0	0	0	copy fasta	OR4K14	chr14	20009143	20024307
OR4K14_chr14_20009143_20024307	0/0	c0007	933	2	1	1	0	0	0	copy fasta	OR4K14	chr14	20009143	20024307
OR4K14_chr14_20009143_20024307	0/0	c0008	933	1	0	0	1	0	0	copy fasta	OR4K14	chr14	20009143	20024307
OR4K14_chr14_20009143_20024307	0/0	c0009	933	1	0	0	1	0	0	copy fasta	OR4K14	chr14	20009143	20024307
OR4K14_chr14_20009143_20024307	0/0	c0010	933	1	1	0	0	0	0	copy fasta	OR4K14	chr14	20009143	20024307
OR4K14_chr14_20009143_20024307	0/0	c0011	933	1	0	1	0	0	0	copy fasta	OR4K14	chr14	20009143	20024307
OR4K14_chr14_20009143_20024307	0/1	c0012	933	1	0	0	0	0	0	copy fasta	OR4K14	chr14	20009143	20024307
OR4K14_chr14_20009143_20024307	0/0	c0013	933	1	0	0	1	0	0	copy fasta	OR4K14	chr14	20009143	20024307
OR4K14_chr14_20009143_20024307	0/0	c0014	933	1	1	0	0	0	0	copy fasta	OR4K14	chr14	20009143	20024307
OR4K14_chr14_20009143_20024307	0/0	c0015	933	1	0	0	1	0	0	copy fasta	OR4K14	chr14	20009143	20024307
OR4K14_chr14_20009143_20024307	0/0	c0016	933	1	1	0	0	0	0	copy fasta	OR4K14	chr14	20009143	20024307
OR4K14_chr14_20009143_20024307	0/0	c0017	933	1	1	0	0	0	0	copy fasta	OR4K14	chr14	20009143	20024307
OR4K15_chr14_19970591_19981565	0/1	c0001	975	293	19	59	175	9	30	copy fasta	OR4K15	chr14	19970591	19981565
OR4K15_chr14_19970591_19981565	0/0	c0002	975	71	55	6	6	0	4	copy fasta	OR4K15	chr14	19970591	19981565
OR4K15_chr14_19970591_19981565	0/0	c0003	975	64	14	11	26	5	8	copy fasta	OR4K15	chr14	19970591	19981565
OR4K15_chr14_19970591_19981565	1/0	c0004	975	16	7	4	2	2	0	copy fasta	OR4K15	chr14	19970591	19981565
OR4K15_chr14_19970591_19981565	0/0	c0005	975	4	0	0	4	0	0	copy fasta	OR4K15	chr14	19970591	19981565
OR4K15_chr14_19970591_19981565	0/0	c0006	975	3	0	1	0	0	2	copy fasta	OR4K15	chr14	19970591	19981565
OR4K15_chr14_19970591_19981565	0/0	c0007	975	3	0	0	3	0	0	copy fasta	OR4K15	chr14	19970591	19981565
OR4K15_chr14_19970591_19981565	0/0	c0008	975	2	2	0	0	0	0	copy fasta	OR4K15	chr14	19970591	19981565
OR4K15_chr14_19970591_19981565	0/0	c0009	975	2	0	0	2	0	0	copy fasta	OR4K15	chr14	19970591	19981565
OR4K15_chr14_19970591_19981565	0/0	c0010	975	1	0	1	0	0	0	copy fasta	OR4K15	chr14	19970591	19981565
OR4K15_chr14_19970591_19981565	0/0	c0011	975	1	1	0	0	0	0	copy fasta	OR4K15	chr14	19970591	19981565
OR4K17_chr14_20105739_20127199	1/1	c0001	939	225	58	48	91	12	14	copy fasta	OR4K17	chr14	20105739	20127199
OR4K17_chr14_20105739_20127199	0/0	c0002	939	190	30	32	102	4	22	copy fasta	OR4K17	chr14	20105739	20127199
OR4K17_chr14_20105739_20127199	0/0	c0003	939	12	2	0	9	0	1	copy fasta	OR4K17	chr14	20105739	20127199