JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
OR4K17_chr14_20105739_20127199	0/0	c0004	939	7	5	2	0	0	0	copy fasta	OR4K17	chr14	20105739	20127199
OR4K17_chr14_20105739_20127199	0/0	c0005	939	4	0	1	0	0	3	copy fasta	OR4K17	chr14	20105739	20127199
OR4K17_chr14_20105739_20127199	0/0	c0006	939	2	1	1	0	0	0	copy fasta	OR4K17	chr14	20105739	20127199
OR4K17_chr14_20105739_20127199	0/0	c0007	939	2	0	0	2	0	0	copy fasta	OR4K17	chr14	20105739	20127199
OR4K17_chr14_20105739_20127199	0/0	c0008	939	2	0	0	2	0	0	copy fasta	OR4K17	chr14	20105739	20127199
OR4K1_chr14_19925917_19941757	0/0	c0001	936	74	4	8	60	1	1	copy fasta	OR4K1	chr14	19925917	19941757
OR4K1_chr14_19925917_19941757	1/0	c0002	936	69	22	14	24	5	3	copy fasta	OR4K1	chr14	19925917	19941757
OR4K1_chr14_19925917_19941757	0/0	c0003	936	41	1	12	21	5	2	copy fasta	OR4K1	chr14	19925917	19941757
OR4K1_chr14_19925917_19941757	0/1	c0004	936	27	2	4	15	3	2	copy fasta	OR4K1	chr14	19925917	19941757
OR4K1_chr14_19925917_19941757	0/0	c0005	936	15	5	1	7	0	2	copy fasta	OR4K1	chr14	19925917	19941757
OR4K1_chr14_19925917_19941757	0/0	c0006	936	11	3	3	5	0	0	copy fasta	OR4K1	chr14	19925917	19941757
OR4K1_chr14_19925917_19941757	0/0	c0007	936	10	10	0	0	0	0	copy fasta	OR4K1	chr14	19925917	19941757
OR4K1_chr14_19925917_19941757	0/0	c0008	936	2	2	0	0	0	0	copy fasta	OR4K1	chr14	19925917	19941757
OR4K1_chr14_19925917_19941757	0/0	c0009	936	1	0	0	1	0	0	copy fasta	OR4K1	chr14	19925917	19941757
OR4K1_chr14_19925917_19941757	0/0	c0010	936	1	0	0	1	0	0	copy fasta	OR4K1	chr14	19925917	19941757
OR4K1_chr14_19925917_19941757	0/0	c0011	936	1	1	0	0	0	0	copy fasta	OR4K1	chr14	19925917	19941757
OR4K2_chr14_19870142_19888932	1/0	c0001	945	198	43	32	108	9	5	copy fasta	OR4K2	chr14	19870142	19888932
OR4K2_chr14_19870142_19888932	0/1	c0002	945	44	13	12	8	5	5	copy fasta	OR4K2	chr14	19870142	19888932
OR4K2_chr14_19870142_19888932	0/0	c0003	945	4	4	0	0	0	0	copy fasta	OR4K2	chr14	19870142	19888932
OR4K2_chr14_19870142_19888932	0/0	c0004	945	4	0	0	4	0	0	copy fasta	OR4K2	chr14	19870142	19888932
OR4K2_chr14_19870142_19888932	0/0	c0005	945	2	1	1	0	0	0	copy fasta	OR4K2	chr14	19870142	19888932
OR4K2_chr14_19870142_19888932	0/0	c0006	945	1	1	0	0	0	0	copy fasta	OR4K2	chr14	19870142	19888932
OR4K2_chr14_19870142_19888932	0/0	c0007	945	1	0	1	0	0	0	copy fasta	OR4K2	chr14	19870142	19888932
OR4K5_chr14_19915607_19926578	1/1	c0001	972	145	28	38	59	11	7	copy fasta	OR4K5	chr14	19915607	19926578
OR4K5_chr14_19915607_19926578	0/0	c0002	972	67	1	2	62	1	1	copy fasta	OR4K5	chr14	19915607	19926578
OR4K5_chr14_19915607_19926578	0/0	c0003	972	12	12	0	0	0	0	copy fasta	OR4K5	chr14	19915607	19926578
OR4K5_chr14_19915607_19926578	0/0	c0004	972	3	3	0	0	0	0	copy fasta	OR4K5	chr14	19915607	19926578
OR4K5_chr14_19915607_19926578	0/0	c0005	972	2	2	0	0	0	0	copy fasta	OR4K5	chr14	19915607	19926578
OR4K5_chr14_19915607_19926578	0/0	c0006	972	2	2	0	0	0	0	copy fasta	OR4K5	chr14	19915607	19926578
OR4K5_chr14_19915607_19926578	0/0	c0007	972	1	1	0	0	0	0	copy fasta	OR4K5	chr14	19915607	19926578
OR4K5_chr14_19915607_19926578	0/0	c0008	972	1	1	0	0	0	0	copy fasta	OR4K5	chr14	19915607	19926578
OR4K5_chr14_19915607_19926578	0/0	c0009	972	1	0	0	1	0	0	copy fasta	OR4K5	chr14	19915607	19926578
OR4K5_chr14_19915607_19926578	0/0	c0010	972	1	1	0	0	0	0	copy fasta	OR4K5	chr14	19915607	19926578
OR4K5_chr14_19915607_19926578	0/0	c0011	972	1	1	0	0	0	0	copy fasta	OR4K5	chr14	19915607	19926578
OR4L1_chr14_20055045_20065983	0/1	c0001	939	188	38	25	101	11	12	copy fasta	OR4L1	chr14	20055045	20065983
OR4L1_chr14_20055045_20065983	0/0	c0002	920	178	23	39	88	4	24	copy fasta	OR4L1	chr14	20055045	20065983
OR4L1_chr14_20055045_20065983	0/0	c0003	920	31	1	15	7	1	7	copy fasta	OR4L1	chr14	20055045	20065983
OR4L1_chr14_20055045_20065983	1/0	c0004	939	9	8	0	0	0	0	copy fasta	OR4L1	chr14	20055045	20065983
OR4L1_chr14_20055045_20065983	0/0	c0005	920	5	5	0	0	0	0	copy fasta	OR4L1	chr14	20055045	20065983
OR4L1_chr14_20055045_20065983	0/0	c0006	920	4	3	1	0	0	0	copy fasta	OR4L1	chr14	20055045	20065983
OR4L1_chr14_20055045_20065983	0/0	c0007	920	3	0	0	3	0	0	copy fasta	OR4L1	chr14	20055045	20065983
OR4L1_chr14_20055045_20065983	0/0	c0008	920	3	3	0	0	0	0	copy fasta	OR4L1	chr14	20055045	20065983
OR4L1_chr14_20055045_20065983	0/0	c0009	920	3	3	0	0	0	0	copy fasta	OR4L1	chr14	20055045	20065983
OR4L1_chr14_20055045_20065983	0/0	c0010	920	3	3	0	0	0	0	copy fasta	OR4L1	chr14	20055045	20065983
OR4L1_chr14_20055045_20065983	0/0	c0011	920	3	2	1	0	0	0	copy fasta	OR4L1	chr14	20055045	20065983
OR4L1_chr14_20055045_20065983	0/0	c0012	920	2	2	0	0	0	0	copy fasta	OR4L1	chr14	20055045	20065983
OR4L1_chr14_20055045_20065983	0/0	c0013	939	2	0	0	1	0	1	copy fasta	OR4L1	chr14	20055045	20065983
OR4L1_chr14_20055045_20065983	0/0	c0014	920	1	0	0	1	0	0	copy fasta	OR4L1	chr14	20055045	20065983
OR4L1_chr14_20055045_20065983	0/0	c0015	920	1	0	0	1	0	0	copy fasta	OR4L1	chr14	20055045	20065983
OR4L1_chr14_20055045_20065983	0/0	c0016	920	1	1	0	0	0	0	copy fasta	OR4L1	chr14	20055045	20065983