JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
OR4L1_chr14_20055045_20065983	0/0	c0017	939	1	1	0	0	0	0	copy fasta	OR4L1	chr14	20055045	20065983
OR4L1_chr14_20055045_20065983	0/0	c0018	939	1	0	1	0	0	0	copy fasta	OR4L1	chr14	20055045	20065983
OR4L1_chr14_20055045_20065983	0/0	c0019	939	1	1	0	0	0	0	copy fasta	OR4L1	chr14	20055045	20065983
OR4M1_chr14_19768504_19788696	1/1	c0001	942	206	48	36	102	9	9	copy fasta	OR4M1	chr14	19768504	19788696
OR4M1_chr14_19768504_19788696	0/0	c0002	942	57	4	12	35	1	5	copy fasta	OR4M1	chr14	19768504	19788696
OR4M1_chr14_19768504_19788696	0/0	c0003	942	4	4	0	0	0	0	copy fasta	OR4M1	chr14	19768504	19788696
OR4M1_chr14_19768504_19788696	0/0	c0004	942	3	0	0	3	0	0	copy fasta	OR4M1	chr14	19768504	19788696
OR4M1_chr14_19768504_19788696	0/0	c0005	942	1	1	0	0	0	0	copy fasta	OR4M1	chr14	19768504	19788696
OR4M1_chr14_19768504_19788696	0/0	c0006	942	1	1	0	0	0	0	copy fasta	OR4M1	chr14	19768504	19788696
OR4M1_chr14_19768504_19788696	0/0	c0007	942	1	1	0	0	0	0	copy fasta	OR4M1	chr14	19768504	19788696
OR4M1_chr14_19768504_19788696	0/0	c0008	942	1	1	0	0	0	0	copy fasta	OR4M1	chr14	19768504	19788696
OR4M1_chr14_19768504_19788696	0/0	c0009	942	1	0	0	1	0	0	copy fasta	OR4M1	chr14	19768504	19788696
OR4M1_chr14_19768504_19788696	0/0	c0010	942	1	0	0	1	0	0	copy fasta	OR4M1	chr14	19768504	19788696
OR4M2B_chr15_21632909_21643992	0/0	c0001	942	58	2	15	32	1	8	copy fasta	OR4M2B	chr15	21632909	21643992
OR4M2B_chr15_21632909_21643992	0/1	c0002	942	42	4	10	17	3	7	copy fasta	OR4M2B	chr15	21632909	21643992
OR4M2B_chr15_21632909_21643992	0/0	c0003	942	32	6	17	6	0	3	copy fasta	OR4M2B	chr15	21632909	21643992
OR4M2B_chr15_21632909_21643992	0/0	c0004	942	25	6	5	12	0	2	copy fasta	OR4M2B	chr15	21632909	21643992
OR4M2B_chr15_21632909_21643992	0/0	c0005	942	15	0	0	13	0	2	copy fasta	OR4M2B	chr15	21632909	21643992
OR4M2B_chr15_21632909_21643992	0/0	c0006	942	14	4	0	10	0	0	copy fasta	OR4M2B	chr15	21632909	21643992
OR4M2B_chr15_21632909_21643992	0/0	c0007	942	10	0	0	9	0	1	copy fasta	OR4M2B	chr15	21632909	21643992
OR4M2B_chr15_21632909_21643992	0/0	c0008	942	3	3	0	0	0	0	copy fasta	OR4M2B	chr15	21632909	21643992
OR4M2B_chr15_21632909_21643992	0/0	c0009	942	3	2	1	0	0	0	copy fasta	OR4M2B	chr15	21632909	21643992
OR4M2B_chr15_21632909_21643992	0/0	c0010	942	3	0	0	2	0	1	copy fasta	OR4M2B	chr15	21632909	21643992
OR4M2B_chr15_21632909_21643992	0/0	c0011	942	2	2	0	0	0	0	copy fasta	OR4M2B	chr15	21632909	21643992
OR4M2B_chr15_21632909_21643992	0/0	c0012	942	2	0	0	2	0	0	copy fasta	OR4M2B	chr15	21632909	21643992
OR4M2B_chr15_21632909_21643992	0/0	c0013	942	2	2	0	0	0	0	copy fasta	OR4M2B	chr15	21632909	21643992
OR4M2B_chr15_21632909_21643992	0/0	c0014	942	1	1	0	0	0	0	copy fasta	OR4M2B	chr15	21632909	21643992
OR4M2B_chr15_21632909_21643992	0/0	c0015	942	1	1	0	0	0	0	copy fasta	OR4M2B	chr15	21632909	21643992
OR4M2B_chr15_21632909_21643992	0/0	c0016	942	1	0	0	1	0	0	copy fasta	OR4M2B	chr15	21632909	21643992
OR4M2B_chr15_21632909_21643992	0/0	c0017	942	1	1	0	0	0	0	copy fasta	OR4M2B	chr15	21632909	21643992
OR4M2_chr15_22075527_22086610	0/0	c0001	942	14	0	0	13	0	1	copy fasta	OR4M2	chr15	22075527	22086610
OR4M2_chr15_22075527_22086610	0/0	c0002	942	12	6	2	4	0	0	copy fasta	OR4M2	chr15	22075527	22086610
OR4M2_chr15_22075527_22086610	0/0	c0003	942	8	8	0	0	0	0	copy fasta	OR4M2	chr15	22075527	22086610
OR4M2_chr15_22075527_22086610	0/0	c0004	942	6	0	1	1	2	2	copy fasta	OR4M2	chr15	22075527	22086610
OR4M2_chr15_22075527_22086610	0/0	c0005	942	3	0	0	3	0	0	copy fasta	OR4M2	chr15	22075527	22086610
OR4M2_chr15_22075527_22086610	0/0	c0006	942	2	0	0	2	0	0	copy fasta	OR4M2	chr15	22075527	22086610
OR4M2_chr15_22075527_22086610	0/0	c0007	942	1	1	0	0	0	0	copy fasta	OR4M2	chr15	22075527	22086610
OR4M2_chr15_22075527_22086610	0/0	c0008	942	1	1	0	0	0	0	copy fasta	OR4M2	chr15	22075527	22086610
OR4M2_chr15_22075527_22086610	0/0	c0009	942	1	0	0	0	0	1	copy fasta	OR4M2	chr15	22075527	22086610
OR4M2_chr15_22075527_22086610	0/0	c0010	942	1	0	0	1	0	0	copy fasta	OR4M2	chr15	22075527	22086610
OR4M2_chr15_22075527_22086610	0/0	c0011	942	1	0	1	0	0	0	copy fasta	OR4M2	chr15	22075527	22086610
OR4N2_chr14_19798770_19835253	1/0	c0001	924	117	21	26	62	1	6	copy fasta	OR4N2	chr14	19798770	19835253
OR4N2_chr14_19798770_19835253	0/0	c0002	924	63	11	5	38	3	6	copy fasta	OR4N2	chr14	19798770	19835253
OR4N2_chr14_19798770_19835253	0/0	c0003	924	40	14	5	14	0	7	copy fasta	OR4N2	chr14	19798770	19835253
OR4N2_chr14_19798770_19835253	0/0	c0004	924	18	2	1	14	1	0	copy fasta	OR4N2	chr14	19798770	19835253
OR4N2_chr14_19798770_19835253	0/0	c0005	924	11	0	1	8	0	2	copy fasta	OR4N2	chr14	19798770	19835253
OR4N2_chr14_19798770_19835253	0/1	c0006	924	6	4	0	0	1	0	copy fasta	OR4N2	chr14	19798770	19835253
OR4N2_chr14_19798770_19835253	0/0	c0007	924	5	3	0	1	0	1	copy fasta	OR4N2	chr14	19798770	19835253
OR4N2_chr14_19798770_19835253	0/0	c0008	924	4	3	1	0	0	0	copy fasta	OR4N2	chr14	19798770	19835253
OR4N2_chr14_19798770_19835253	0/0	c0009	924	3	2	1	0	0	0	copy fasta	OR4N2	chr14	19798770	19835253