JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
OR4N2_chr14_19798770_19835253	0/0	c0010	924	2	2	0	0	0	0	copy fasta	OR4N2	chr14	19798770	19835253
OR4N2_chr14_19798770_19835253	0/0	c0011	924	2	2	0	0	0	0	copy fasta	OR4N2	chr14	19798770	19835253
OR4N2_chr14_19798770_19835253	0/0	c0012	924	1	0	0	1	0	0	copy fasta	OR4N2	chr14	19798770	19835253
OR4N2_chr14_19798770_19835253	0/0	c0013	924	1	1	0	0	0	0	copy fasta	OR4N2	chr14	19798770	19835253
OR4N2_chr14_19798770_19835253	0/0	c0014	924	1	1	0	0	0	0	copy fasta	OR4N2	chr14	19798770	19835253
OR4N4C_chr15_21646844_21657968	0/0	c0001	951	92	15	30	35	3	9	copy fasta	OR4N4C	chr15	21646844	21657968
OR4N4C_chr15_21646844_21657968	1/0	c0002	951	24	5	5	12	0	1	copy fasta	OR4N4C	chr15	21646844	21657968
OR4N4C_chr15_21646844_21657968	0/0	c0003	951	23	0	5	12	2	4	copy fasta	OR4N4C	chr15	21646844	21657968
OR4N4C_chr15_21646844_21657968	0/0	c0004	951	21	5	0	16	0	0	copy fasta	OR4N4C	chr15	21646844	21657968
OR4N4C_chr15_21646844_21657968	0/1	c0005	951	19	1	5	7	1	4	copy fasta	OR4N4C	chr15	21646844	21657968
OR4N4C_chr15_21646844_21657968	0/0	c0006	951	12	4	1	7	0	0	copy fasta	OR4N4C	chr15	21646844	21657968
OR4N4C_chr15_21646844_21657968	0/0	c0007	951	10	0	0	10	0	0	copy fasta	OR4N4C	chr15	21646844	21657968
OR4N4C_chr15_21646844_21657968	0/0	c0008	951	6	5	0	1	0	0	copy fasta	OR4N4C	chr15	21646844	21657968
OR4N4C_chr15_21646844_21657968	0/0	c0009	951	3	3	0	0	0	0	copy fasta	OR4N4C	chr15	21646844	21657968
OR4N4C_chr15_21646844_21657968	0/0	c0010	951	2	0	0	1	0	1	copy fasta	OR4N4C	chr15	21646844	21657968
OR4N4C_chr15_21646844_21657968	0/0	c0011	951	1	0	0	0	0	1	copy fasta	OR4N4C	chr15	21646844	21657968
OR4N4C_chr15_21646844_21657968	0/0	c0012	951	1	0	0	1	0	0	copy fasta	OR4N4C	chr15	21646844	21657968
OR4N4C_chr15_21646844_21657968	0/0	c0013	951	1	1	0	0	0	0	copy fasta	OR4N4C	chr15	21646844	21657968
OR4N4C_chr15_21646844_21657968	0/0	c0014	951	1	1	0	0	0	0	copy fasta	OR4N4C	chr15	21646844	21657968
OR4N4_chr15_22089522_22100862	0/0	c0001	951	20	11	2	4	0	3	copy fasta	OR4N4	chr15	22089522	22100862
OR4N4_chr15_22089522_22100862	0/0	c0002	951	6	3	1	2	0	0	copy fasta	OR4N4	chr15	22089522	22100862
OR4N4_chr15_22089522_22100862	0/0	c0003	951	5	1	0	4	0	0	copy fasta	OR4N4	chr15	22089522	22100862
OR4N4_chr15_22089522_22100862	1/0	c0004	951	3	1	1	0	0	0	copy fasta	OR4N4	chr15	22089522	22100862
OR4N4_chr15_22089522_22100862	0/0	c0005	951	3	3	0	0	0	0	copy fasta	OR4N4	chr15	22089522	22100862
OR4N4_chr15_22089522_22100862	0/0	c0006	951	2	2	0	0	0	0	copy fasta	OR4N4	chr15	22089522	22100862
OR4N4_chr15_22089522_22100862	0/0	c0007	951	2	0	0	1	0	1	copy fasta	OR4N4	chr15	22089522	22100862
OR4N4_chr15_22089522_22100862	0/0	c0008	951	1	1	0	0	0	0	copy fasta	OR4N4	chr15	22089522	22100862
OR4N4_chr15_22089522_22100862	0/0	c0009	951	1	1	0	0	0	0	copy fasta	OR4N4	chr15	22089522	22100862
OR4N4_chr15_22089522_22100862	0/0	c0010	951	1	0	0	1	0	0	copy fasta	OR4N4	chr15	22089522	22100862
OR4N4_chr15_22089522_22100862	0/0	c0011	951	1	1	0	0	0	0	copy fasta	OR4N4	chr15	22089522	22100862
OR4N5_chr14_20133820_20150471	1/1	c0001	927	407	76	80	189	14	46	copy fasta	OR4N5	chr14	20133820	20150471
OR4N5_chr14_20133820_20150471	0/0	c0002	927	10	2	0	8	0	0	copy fasta	OR4N5	chr14	20133820	20150471
OR4N5_chr14_20133820_20150471	0/0	c0003	927	9	0	0	9	0	0	copy fasta	OR4N5	chr14	20133820	20150471
OR4N5_chr14_20133820_20150471	0/0	c0004	927	7	7	0	0	0	0	copy fasta	OR4N5	chr14	20133820	20150471
OR4N5_chr14_20133820_20150471	0/0	c0005	927	3	3	0	0	0	0	copy fasta	OR4N5	chr14	20133820	20150471
OR4N5_chr14_20133820_20150471	0/0	c0006	927	2	0	0	2	0	0	copy fasta	OR4N5	chr14	20133820	20150471
OR4N5_chr14_20133820_20150471	0/0	c0007	927	2	2	0	0	0	0	copy fasta	OR4N5	chr14	20133820	20150471
OR4N5_chr14_20133820_20150471	0/0	c0008	927	1	1	0	0	0	0	copy fasta	OR4N5	chr14	20133820	20150471
OR4N5_chr14_20133820_20150471	0/0	c0009	927	1	0	0	1	0	0	copy fasta	OR4N5	chr14	20133820	20150471
OR4N5_chr14_20133820_20150471	0/0	c0010	927	1	0	0	1	0	0	copy fasta	OR4N5	chr14	20133820	20150471
OR4N5_chr14_20133820_20150471	0/0	c0011	927	1	1	0	0	0	0	copy fasta	OR4N5	chr14	20133820	20150471
OR4N5_chr14_20133820_20150471	0/0	c0012	927	1	0	0	1	0	0	copy fasta	OR4N5	chr14	20133820	20150471
OR4N5_chr14_20133820_20150471	0/0	c0013	927	1	0	0	1	0	0	copy fasta	OR4N5	chr14	20133820	20150471
OR4P4_chr11_55630113_55645309	1/1	c0001	939	143	51	25	47	5	13	copy fasta	OR4P4	chr11	55630113	55645309
OR4P4_chr11_55630113_55645309	0/0	c0002	939	61	7	10	29	4	11	copy fasta	OR4P4	chr11	55630113	55645309
OR4P4_chr11_55630113_55645309	0/0	c0003	939	6	6	0	0	0	0	copy fasta	OR4P4	chr11	55630113	55645309
OR4P4_chr11_55630113_55645309	0/0	c0004	939	4	4	0	0	0	0	copy fasta	OR4P4	chr11	55630113	55645309
OR4P4_chr11_55630113_55645309	0/0	c0005	939	3	3	0	0	0	0	copy fasta	OR4P4	chr11	55630113	55645309
OR4P4_chr11_55630113_55645309	0/0	c0006	939	3	3	0	0	0	0	copy fasta	OR4P4	chr11	55630113	55645309
OR4P4_chr11_55630113_55645309	0/0	c0007	939	3	1	1	0	1	0	copy fasta	OR4P4	chr11	55630113	55645309