JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
OR4P4_chr11_55630113_55645309	0/0	c0008	939	1	1	0	0	0	0	copy fasta	OR4P4	chr11	55630113	55645309
OR4Q3_chr14_19738571_19754469	0/1	c0001	966	174	15	30	115	4	9	copy fasta	OR4Q3	chr14	19738571	19754469
OR4Q3_chr14_19738571_19754469	1/0	c0002	966	69	19	12	33	2	2	copy fasta	OR4Q3	chr14	19738571	19754469
OR4Q3_chr14_19738571_19754469	0/0	c0003	966	14	7	2	0	2	3	copy fasta	OR4Q3	chr14	19738571	19754469
OR4Q3_chr14_19738571_19754469	0/0	c0004	966	3	0	0	3	0	0	copy fasta	OR4Q3	chr14	19738571	19754469
OR4Q3_chr14_19738571_19754469	0/0	c0005	966	2	2	0	0	0	0	copy fasta	OR4Q3	chr14	19738571	19754469
OR4Q3_chr14_19738571_19754469	0/0	c0006	966	2	0	0	2	0	0	copy fasta	OR4Q3	chr14	19738571	19754469
OR4Q3_chr14_19738571_19754469	0/0	c0007	966	2	0	2	0	0	0	copy fasta	OR4Q3	chr14	19738571	19754469
OR4Q3_chr14_19738571_19754469	0/0	c0008	966	2	2	0	0	0	0	copy fasta	OR4Q3	chr14	19738571	19754469
OR4Q3_chr14_19738571_19754469	0/0	c0009	966	1	1	0	0	0	0	copy fasta	OR4Q3	chr14	19738571	19754469
OR4Q3_chr14_19738571_19754469	0/0	c0010	966	1	1	0	0	0	0	copy fasta	OR4Q3	chr14	19738571	19754469
OR4Q3_chr14_19738571_19754469	0/0	c0011	966	1	0	0	1	0	0	copy fasta	OR4Q3	chr14	19738571	19754469
OR4Q3_chr14_19738571_19754469	0/0	c0012	966	1	0	0	1	0	0	copy fasta	OR4Q3	chr14	19738571	19754469
OR4Q3_chr14_19738571_19754469	0/0	c0013	966	1	1	0	0	0	0	copy fasta	OR4Q3	chr14	19738571	19754469
OR4Q3_chr14_19738571_19754469	0/0	c0014	966	1	1	0	0	0	0	copy fasta	OR4Q3	chr14	19738571	19754469
OR4Q3_chr14_19738571_19754469	0/0	c0015	966	1	0	0	1	0	0	copy fasta	OR4Q3	chr14	19738571	19754469
OR4Q3_chr14_19738571_19754469	0/0	c0016	952	1	1	0	0	0	0	copy fasta	OR4Q3	chr14	19738571	19754469
OR4S1_chr11_48301223_48312152	1/1	c0001	930	239	41	52	114	9	21	copy fasta	OR4S1	chr11	48301223	48312152
OR4S1_chr11_48301223_48312152	0/0	c0002	930	172	48	19	77	8	20	copy fasta	OR4S1	chr11	48301223	48312152
OR4S1_chr11_48301223_48312152	0/0	c0003	534	3	1	1	0	0	1	copy fasta	OR4S1	chr11	48301223	48312152
OR4S1_chr11_48301223_48312152	0/0	c0004	930	3	3	0	0	0	0	copy fasta	OR4S1	chr11	48301223	48312152
OR4S1_chr11_48301223_48312152	0/0	c0005	930	3	3	0	0	0	0	copy fasta	OR4S1	chr11	48301223	48312152
OR4S1_chr11_48301223_48312152	0/0	c0006	930	2	0	1	0	1	0	copy fasta	OR4S1	chr11	48301223	48312152
OR4S1_chr11_48301223_48312152	0/0	c0007	930	2	2	0	0	0	0	copy fasta	OR4S1	chr11	48301223	48312152
OR4S1_chr11_48301223_48312152	0/0	c0008	930	1	0	0	1	0	0	copy fasta	OR4S1	chr11	48301223	48312152
OR4S1_chr11_48301223_48312152	0/0	c0009	930	1	0	1	0	0	0	copy fasta	OR4S1	chr11	48301223	48312152
OR4S2_chr11_55643327_55657854	1/1	c0001	936	137	43	20	56	3	13	copy fasta	OR4S2	chr11	55643327	55657854
OR4S2_chr11_55643327_55657854	0/0	c0002	936	64	15	6	30	4	9	copy fasta	OR4S2	chr11	55643327	55657854
OR4S2_chr11_55643327_55657854	0/0	c0003	936	6	6	0	0	0	0	copy fasta	OR4S2	chr11	55643327	55657854
OR4S2_chr11_55643327_55657854	0/0	c0004	936	4	4	0	0	0	0	copy fasta	OR4S2	chr11	55643327	55657854
OR4S2_chr11_55643327_55657854	0/0	c0005	936	3	3	0	0	0	0	copy fasta	OR4S2	chr11	55643327	55657854
OR4S2_chr11_55643327_55657854	0/0	c0006	936	3	1	1	0	1	0	copy fasta	OR4S2	chr11	55643327	55657854
OR4S2_chr11_55643327_55657854	0/0	c0007	936	3	3	0	0	0	0	copy fasta	OR4S2	chr11	55643327	55657854
OR4S2_chr11_55643327_55657854	0/0	c0008	936	2	2	0	0	0	0	copy fasta	OR4S2	chr11	55643327	55657854
OR4S2_chr11_55643327_55657854	0/0	c0009	936	2	0	0	0	2	0	copy fasta	OR4S2	chr11	55643327	55657854
OR4S2_chr11_55643327_55657854	0/0	c0010	936	1	0	1	0	0	0	copy fasta	OR4S2	chr11	55643327	55657854
OR4S2_chr11_55643327_55657854	0/0	c0011	936	1	1	0	0	0	0	copy fasta	OR4S2	chr11	55643327	55657854
OR4S2_chr11_55643327_55657854	0/0	c0012	936	1	0	0	1	0	0	copy fasta	OR4S2	chr11	55643327	55657854
OR4S2_chr11_55643327_55657854	0/0	c0013	936	1	0	0	1	0	0	copy fasta	OR4S2	chr11	55643327	55657854
OR4X1_chr11_48258861_48269778	0/0	c0001	918	160	42	19	72	9	18	copy fasta	OR4X1	chr11	48258861	48269778
OR4X1_chr11_48258861_48269778	0/0	c0002	915	120	5	23	74	4	14	copy fasta	OR4X1	chr11	48258861	48269778
OR4X1_chr11_48258861_48269778	0/1	c0003	915	79	24	12	38	1	3	copy fasta	OR4X1	chr11	48258861	48269778
OR4X1_chr11_48258861_48269778	0/0	c0004	915	8	8	0	0	0	0	copy fasta	OR4X1	chr11	48258861	48269778
OR4X1_chr11_48258861_48269778	0/0	c0005	915	8	6	1	0	0	1	copy fasta	OR4X1	chr11	48258861	48269778
OR4X1_chr11_48258861_48269778	1/0	c0006	918	6	4	1	0	0	0	copy fasta	OR4X1	chr11	48258861	48269778
OR4X1_chr11_48258861_48269778	0/0	c0007	915	6	1	3	0	0	2	copy fasta	OR4X1	chr11	48258861	48269778
OR4X1_chr11_48258861_48269778	0/0	c0008	918	5	4	1	0	0	0	copy fasta	OR4X1	chr11	48258861	48269778
OR4X1_chr11_48258861_48269778	0/0	c0009	915	2	0	1	0	0	1	copy fasta	OR4X1	chr11	48258861	48269778
OR4X1_chr11_48258861_48269778	0/0	c0010	918	1	0	0	1	0	0	copy fasta	OR4X1	chr11	48258861	48269778
OR4X1_chr11_48258861_48269778	0/0	c0011	915	1	0	0	1	0	0	copy fasta	OR4X1	chr11	48258861	48269778