JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
OR4X1_chr11_48258861_48269778	0/0	c0012	918	1	0	0	0	0	1	copy fasta	OR4X1	chr11	48258861	48269778
OR4X1_chr11_48258861_48269778	0/0	c0013	915	1	1	0	0	0	0	copy fasta	OR4X1	chr11	48258861	48269778
OR4X1_chr11_48258861_48269778	0/0	c0014	915	1	1	0	0	0	0	copy fasta	OR4X1	chr11	48258861	48269778
OR4X1_chr11_48258861_48269778	0/0	c0015	915	1	1	0	0	0	0	copy fasta	OR4X1	chr11	48258861	48269778
OR4X1_chr11_48258861_48269778	0/0	c0016	918	1	0	1	0	0	0	copy fasta	OR4X1	chr11	48258861	48269778
OR4X1_chr11_48258861_48269778	0/0	c0017	918	1	1	0	0	0	0	copy fasta	OR4X1	chr11	48258861	48269778
OR4X2_chr11_48240104_48251015	1/0	c0001	912	343	61	64	170	17	30	copy fasta	OR4X2	chr11	48240104	48251015
OR4X2_chr11_48240104_48251015	0/1	c0002	912	78	21	12	40	1	3	copy fasta	OR4X2	chr11	48240104	48251015
OR4X2_chr11_48240104_48251015	0/0	c0003	912	6	6	0	0	0	0	copy fasta	OR4X2	chr11	48240104	48251015
OR4X2_chr11_48240104_48251015	0/0	c0004	912	6	6	0	0	0	0	copy fasta	OR4X2	chr11	48240104	48251015
OR4X2_chr11_48240104_48251015	0/0	c0005	912	1	1	0	0	0	0	copy fasta	OR4X2	chr11	48240104	48251015
OR4X2_chr11_48240104_48251015	0/0	c0006	912	1	1	0	0	0	0	copy fasta	OR4X2	chr11	48240104	48251015
OR4X2_chr11_48240104_48251015	0/0	c0007	912	1	1	0	0	0	0	copy fasta	OR4X2	chr11	48240104	48251015
OR4X2_chr11_48240104_48251015	0/0	c0008	912	1	0	0	0	0	1	copy fasta	OR4X2	chr11	48240104	48251015
OR4X2_chr11_48240104_48251015	0/0	c0009	912	1	1	0	0	0	0	copy fasta	OR4X2	chr11	48240104	48251015
OR51A2_chr11_4949772_4960713	0/0	c0001	942	100	12	21	51	1	15	copy fasta	OR51A2	chr11	4949772	4960713
OR51A2_chr11_4949772_4960713	0/1	c0002	942	91	15	21	45	5	4	copy fasta	OR51A2	chr11	4949772	4960713
OR51A2_chr11_4949772_4960713	0/0	c0003	942	61	26	2	26	0	7	copy fasta	OR51A2	chr11	4949772	4960713
OR51A2_chr11_4949772_4960713	0/0	c0004	942	29	11	7	9	0	2	copy fasta	OR51A2	chr11	4949772	4960713
OR51A2_chr11_4949772_4960713	0/0	c0005	942	23	1	1	14	1	6	copy fasta	OR51A2	chr11	4949772	4960713
OR51A2_chr11_4949772_4960713	0/0	c0006	942	11	4	3	0	1	3	copy fasta	OR51A2	chr11	4949772	4960713
OR51A2_chr11_4949772_4960713	1/0	c0007	942	5	2	1	1	0	0	copy fasta	OR51A2	chr11	4949772	4960713
OR51A2_chr11_4949772_4960713	0/0	c0008	942	4	1	2	0	0	1	copy fasta	OR51A2	chr11	4949772	4960713
OR51A2_chr11_4949772_4960713	0/0	c0009	942	4	4	0	0	0	0	copy fasta	OR51A2	chr11	4949772	4960713
OR51A2_chr11_4949772_4960713	0/0	c0010	942	3	3	0	0	0	0	copy fasta	OR51A2	chr11	4949772	4960713
OR51A2_chr11_4949772_4960713	0/0	c0011	942	3	3	0	0	0	0	copy fasta	OR51A2	chr11	4949772	4960713
OR51A2_chr11_4949772_4960713	0/0	c0012	942	2	0	0	2	0	0	copy fasta	OR51A2	chr11	4949772	4960713
OR51A2_chr11_4949772_4960713	0/0	c0013	942	2	0	0	0	0	2	copy fasta	OR51A2	chr11	4949772	4960713
OR51A2_chr11_4949772_4960713	0/0	c0014	942	1	0	0	1	0	0	copy fasta	OR51A2	chr11	4949772	4960713
OR51A2_chr11_4949772_4960713	0/0	c0015	942	1	1	0	0	0	0	copy fasta	OR51A2	chr11	4949772	4960713
OR51A2_chr11_4949772_4960713	0/0	c0016	942	1	1	0	0	0	0	copy fasta	OR51A2	chr11	4949772	4960713
OR51A2_chr11_4949772_4960713	0/0	c0017	942	1	1	0	0	0	0	copy fasta	OR51A2	chr11	4949772	4960713
OR51A2_chr11_4949772_4960713	0/0	c0018	942	1	1	0	0	0	0	copy fasta	OR51A2	chr11	4949772	4960713
OR51A2_chr11_4949772_4960713	0/0	c0019	942	1	0	0	1	0	0	copy fasta	OR51A2	chr11	4949772	4960713
OR51A4_chr11_4937831_4952605	0/0	c0001	942	140	47	11	73	2	7	copy fasta	OR51A4	chr11	4937831	4952605
OR51A4_chr11_4937831_4952605	0/1	c0002	767	132	15	28	74	7	7	copy fasta	OR51A4	chr11	4937831	4952605
OR51A4_chr11_4937831_4952605	0/0	c0003	942	53	1	11	21	3	17	copy fasta	OR51A4	chr11	4937831	4952605
OR51A4_chr11_4937831_4952605	0/0	c0004	942	49	4	9	26	1	9	copy fasta	OR51A4	chr11	4937831	4952605
OR51A4_chr11_4937831_4952605	0/0	c0005	240	19	6	8	0	2	3	copy fasta	OR51A4	chr11	4937831	4952605
OR51A4_chr11_4937831_4952605	0/0	c0006	942	13	0	6	7	0	0	copy fasta	OR51A4	chr11	4937831	4952605
OR51A4_chr11_4937831_4952605	1/0	c0007	942	6	3	2	0	0	0	copy fasta	OR51A4	chr11	4937831	4952605
OR51A4_chr11_4937831_4952605	0/0	c0008	767	5	5	0	0	0	0	copy fasta	OR51A4	chr11	4937831	4952605
OR51A4_chr11_4937831_4952605	0/0	c0009	942	5	5	0	0	0	0	copy fasta	OR51A4	chr11	4937831	4952605
OR51A4_chr11_4937831_4952605	0/0	c0010	942	5	1	0	4	0	0	copy fasta	OR51A4	chr11	4937831	4952605
OR51A4_chr11_4937831_4952605	0/0	c0011	942	4	1	2	0	0	1	copy fasta	OR51A4	chr11	4937831	4952605
OR51A4_chr11_4937831_4952605	0/0	c0012	942	3	3	0	0	0	0	copy fasta	OR51A4	chr11	4937831	4952605
OR51A4_chr11_4937831_4952605	0/0	c0013	942	3	3	0	0	0	0	copy fasta	OR51A4	chr11	4937831	4952605
OR51A4_chr11_4937831_4952605	0/0	c0014	942	2	1	0	0	1	0	copy fasta	OR51A4	chr11	4937831	4952605
OR51A4_chr11_4937831_4952605	0/0	c0015	942	2	2	0	0	0	0	copy fasta	OR51A4	chr11	4937831	4952605
OR51A4_chr11_4937831_4952605	0/0	c0016	942	2	0	0	0	0	2	copy fasta	OR51A4	chr11	4937831	4952605