JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
OR51A4_chr11_4937831_4952605	0/0	c0017	767	1	0	0	1	0	0	copy fasta	OR51A4	chr11	4937831	4952605
OR51A4_chr11_4937831_4952605	0/0	c0018	942	1	0	1	0	0	0	copy fasta	OR51A4	chr11	4937831	4952605
OR51A4_chr11_4937831_4952605	0/0	c0019	942	1	1	0	0	0	0	copy fasta	OR51A4	chr11	4937831	4952605
OR51A7_chr11_4898783_4914462	1/0	c0001	939	184	58	32	78	4	11	copy fasta	OR51A7	chr11	4898783	4914462
OR51A7_chr11_4898783_4914462	0/0	c0002	939	128	9	8	107	1	3	copy fasta	OR51A7	chr11	4898783	4914462
OR51A7_chr11_4898783_4914462	0/0	c0003	939	107	23	34	16	8	26	copy fasta	OR51A7	chr11	4898783	4914462
OR51A7_chr11_4898783_4914462	0/1	c0004	939	19	3	8	0	5	2	copy fasta	OR51A7	chr11	4898783	4914462
OR51A7_chr11_4898783_4914462	0/0	c0005	939	4	2	2	0	0	0	copy fasta	OR51A7	chr11	4898783	4914462
OR51A7_chr11_4898783_4914462	0/0	c0006	939	1	0	0	1	0	0	copy fasta	OR51A7	chr11	4898783	4914462
OR51A7_chr11_4898783_4914462	0/0	c0007	939	1	0	0	1	0	0	copy fasta	OR51A7	chr11	4898783	4914462
OR51A7_chr11_4898783_4914462	0/0	c0008	939	1	0	0	1	0	0	copy fasta	OR51A7	chr11	4898783	4914462
OR51A7_chr11_4898783_4914462	0/0	c0009	939	1	1	0	0	0	0	copy fasta	OR51A7	chr11	4898783	4914462
OR51A7_chr11_4898783_4914462	0/0	c0010	939	1	0	1	0	0	0	copy fasta	OR51A7	chr11	4898783	4914462
OR51A7_chr11_4898783_4914462	0/0	c0011	939	1	0	0	0	0	1	copy fasta	OR51A7	chr11	4898783	4914462
OR51A7_chr11_4898783_4914462	0/0	c0012	939	1	0	1	0	0	0	copy fasta	OR51A7	chr11	4898783	4914462
OR51A7_chr11_4898783_4914462	0/0	c0013	939	1	0	0	1	0	0	copy fasta	OR51A7	chr11	4898783	4914462
OR51A7_chr11_4898783_4914462	0/0	c0014	939	1	0	0	0	0	1	copy fasta	OR51A7	chr11	4898783	4914462
OR51A7_chr11_4898783_4914462	0/0	c0015	939	1	0	0	1	0	0	copy fasta	OR51A7	chr11	4898783	4914462
OR51B2_chr11_5318359_5329297	1/0	c0001	939	162	18	24	106	1	12	copy fasta	OR51B2	chr11	5318359	5329297
OR51B2_chr11_5318359_5329297	0/0	c0002	939	122	40	24	34	6	18	copy fasta	OR51B2	chr11	5318359	5329297
OR51B2_chr11_5318359_5329297	0/0	c0003	939	103	21	24	45	5	8	copy fasta	OR51B2	chr11	5318359	5329297
OR51B2_chr11_5318359_5329297	0/1	c0004	939	46	1	7	33	2	2	copy fasta	OR51B2	chr11	5318359	5329297
OR51B2_chr11_5318359_5329297	0/0	c0005	939	18	14	1	0	0	3	copy fasta	OR51B2	chr11	5318359	5329297
OR51B2_chr11_5318359_5329297	0/0	c0006	939	5	4	1	0	0	0	copy fasta	OR51B2	chr11	5318359	5329297
OR51B2_chr11_5318359_5329297	0/0	c0007	939	2	0	0	2	0	0	copy fasta	OR51B2	chr11	5318359	5329297
OR51B2_chr11_5318359_5329297	0/0	c0008	939	1	0	0	1	0	0	copy fasta	OR51B2	chr11	5318359	5329297
OR51B2_chr11_5318359_5329297	0/0	c0009	939	1	0	0	1	0	0	copy fasta	OR51B2	chr11	5318359	5329297
OR51B2_chr11_5318359_5329297	0/0	c0010	939	1	0	1	0	0	0	copy fasta	OR51B2	chr11	5318359	5329297
OR51B2_chr11_5318359_5329297	0/0	c0011	939	1	0	0	0	0	1	copy fasta	OR51B2	chr11	5318359	5329297
OR51B4_chr11_5296014_5306946	0/1	c0001	933	219	7	36	143	7	25	copy fasta	OR51B4	chr11	5296014	5306946
OR51B4_chr11_5296014_5306946	1/0	c0002	933	105	43	14	34	2	11	copy fasta	OR51B4	chr11	5296014	5306946
OR51B4_chr11_5296014_5306946	0/0	c0003	933	75	18	21	17	7	12	copy fasta	OR51B4	chr11	5296014	5306946
OR51B4_chr11_5296014_5306946	0/0	c0004	933	14	0	1	13	0	0	copy fasta	OR51B4	chr11	5296014	5306946
OR51B4_chr11_5296014_5306946	0/0	c0005	933	13	11	2	0	0	0	copy fasta	OR51B4	chr11	5296014	5306946
OR51B4_chr11_5296014_5306946	0/0	c0006	933	12	11	1	0	0	0	copy fasta	OR51B4	chr11	5296014	5306946
OR51B4_chr11_5296014_5306946	0/0	c0007	933	8	0	7	1	0	0	copy fasta	OR51B4	chr11	5296014	5306946
OR51B4_chr11_5296014_5306946	0/0	c0008	933	4	0	0	4	0	0	copy fasta	OR51B4	chr11	5296014	5306946
OR51B4_chr11_5296014_5306946	0/0	c0009	933	3	2	1	0	0	0	copy fasta	OR51B4	chr11	5296014	5306946
OR51B4_chr11_5296014_5306946	0/0	c0010	933	3	0	1	0	0	2	copy fasta	OR51B4	chr11	5296014	5306946
OR51B4_chr11_5296014_5306946	0/0	c0011	933	2	2	0	0	0	0	copy fasta	OR51B4	chr11	5296014	5306946
OR51B4_chr11_5296014_5306946	0/0	c0012	933	2	0	0	2	0	0	copy fasta	OR51B4	chr11	5296014	5306946
OR51B4_chr11_5296014_5306946	0/0	c0013	933	2	0	0	2	0	0	copy fasta	OR51B4	chr11	5296014	5306946
OR51B4_chr11_5296014_5306946	0/0	c0014	933	2	0	0	2	0	0	copy fasta	OR51B4	chr11	5296014	5306946
OR51B4_chr11_5296014_5306946	0/0	c0015	933	1	1	0	0	0	0	copy fasta	OR51B4	chr11	5296014	5306946
OR51B4_chr11_5296014_5306946	0/0	c0016	933	1	0	0	1	0	0	copy fasta	OR51B4	chr11	5296014	5306946
OR51B4_chr11_5296014_5306946	0/0	c0017	933	1	1	0	0	0	0	copy fasta	OR51B4	chr11	5296014	5306946
OR51B4_chr11_5296014_5306946	0/0	c0018	933	1	0	0	1	0	0	copy fasta	OR51B4	chr11	5296014	5306946
OR51B4_chr11_5296014_5306946	0/0	c0019	933	1	1	0	0	0	0	copy fasta	OR51B4	chr11	5296014	5306946
OR51B4_chr11_5296014_5306946	0/0	c0020	933	1	1	0	0	0	0	copy fasta	OR51B4	chr11	5296014	5306946
OR51B5_chr11_5337586_5348524	1/0	c0001	939	151	9	14	118	1	8	copy fasta	OR51B5	chr11	5337586	5348524