JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
OR51B5_chr11_5337586_5348524	0/1	c0002	939	123	21	28	42	6	25	copy fasta	OR51B5	chr11	5337586	5348524
OR51B5_chr11_5337586_5348524	0/0	c0003	939	111	10	35	48	7	11	copy fasta	OR51B5	chr11	5337586	5348524
OR51B5_chr11_5337586_5348524	0/0	c0004	922	22	20	2	0	0	0	copy fasta	OR51B5	chr11	5337586	5348524
OR51B5_chr11_5337586_5348524	0/0	c0005	939	18	17	1	0	0	0	copy fasta	OR51B5	chr11	5337586	5348524
OR51B5_chr11_5337586_5348524	0/0	c0006	939	15	12	3	0	0	0	copy fasta	OR51B5	chr11	5337586	5348524
OR51B5_chr11_5337586_5348524	0/0	c0007	939	8	0	0	8	0	0	copy fasta	OR51B5	chr11	5337586	5348524
OR51B5_chr11_5337586_5348524	0/0	c0008	939	3	3	0	0	0	0	copy fasta	OR51B5	chr11	5337586	5348524
OR51B5_chr11_5337586_5348524	0/0	c0009	939	3	2	1	0	0	0	copy fasta	OR51B5	chr11	5337586	5348524
OR51B5_chr11_5337586_5348524	0/0	c0010	939	2	2	0	0	0	0	copy fasta	OR51B5	chr11	5337586	5348524
OR51B5_chr11_5337586_5348524	0/0	c0011	939	2	0	0	2	0	0	copy fasta	OR51B5	chr11	5337586	5348524
OR51B5_chr11_5337586_5348524	0/0	c0012	939	1	0	1	0	0	0	copy fasta	OR51B5	chr11	5337586	5348524
OR51B5_chr11_5337586_5348524	0/0	c0013	939	1	0	0	0	0	1	copy fasta	OR51B5	chr11	5337586	5348524
OR51B5_chr11_5337586_5348524	0/0	c0014	939	1	0	0	0	0	1	copy fasta	OR51B5	chr11	5337586	5348524
OR51B5_chr11_5337586_5348524	0/0	c0015	939	1	0	1	0	0	0	copy fasta	OR51B5	chr11	5337586	5348524
OR51B5_chr11_5337586_5348524	0/0	c0016	939	1	1	0	0	0	0	copy fasta	OR51B5	chr11	5337586	5348524
OR51B5_chr11_5337586_5348524	0/0	c0017	939	1	0	0	1	0	0	copy fasta	OR51B5	chr11	5337586	5348524
OR51B5_chr11_5337586_5348524	0/0	c0018	939	1	0	0	1	0	0	copy fasta	OR51B5	chr11	5337586	5348524
OR51B5_chr11_5337586_5348524	0/0	c0019	939	1	1	0	0	0	0	copy fasta	OR51B5	chr11	5337586	5348524
OR51B6_chr11_5346508_5357446	1/0	c0001	939	196	40	36	102	8	9	copy fasta	OR51B6	chr11	5346508	5357446
OR51B6_chr11_5346508_5357446	0/0	c0002	939	68	12	13	38	1	4	copy fasta	OR51B6	chr11	5346508	5357446
OR51B6_chr11_5346508_5357446	0/0	c0003	939	61	6	5	41	1	8	copy fasta	OR51B6	chr11	5346508	5357446
OR51B6_chr11_5346508_5357446	0/0	c0004	939	52	4	12	24	5	7	copy fasta	OR51B6	chr11	5346508	5357446
OR51B6_chr11_5346508_5357446	0/0	c0005	939	34	8	6	12	0	8	copy fasta	OR51B6	chr11	5346508	5357446
OR51B6_chr11_5346508_5357446	0/1	c0006	939	30	10	7	2	3	7	copy fasta	OR51B6	chr11	5346508	5357446
OR51B6_chr11_5346508_5357446	0/0	c0007	939	12	12	0	0	0	0	copy fasta	OR51B6	chr11	5346508	5357446
OR51B6_chr11_5346508_5357446	0/0	c0008	939	2	2	0	0	0	0	copy fasta	OR51B6	chr11	5346508	5357446
OR51B6_chr11_5346508_5357446	0/0	c0009	939	2	1	1	0	0	0	copy fasta	OR51B6	chr11	5346508	5357446
OR51B6_chr11_5346508_5357446	0/0	c0010	939	2	2	0	0	0	0	copy fasta	OR51B6	chr11	5346508	5357446
OR51B6_chr11_5346508_5357446	0/0	c0011	939	1	0	1	0	0	0	copy fasta	OR51B6	chr11	5346508	5357446
OR51B6_chr11_5346508_5357446	0/0	c0012	939	1	1	0	0	0	0	copy fasta	OR51B6	chr11	5346508	5357446
OR51B6_chr11_5346508_5357446	0/0	c0013	939	1	0	1	0	0	0	copy fasta	OR51B6	chr11	5346508	5357446
OR51B6_chr11_5346508_5357446	0/0	c0014	939	1	0	0	0	0	1	copy fasta	OR51B6	chr11	5346508	5357446
OR51B6_chr11_5346508_5357446	0/0	c0015	939	1	1	0	0	0	0	copy fasta	OR51B6	chr11	5346508	5357446
OR51B6_chr11_5346508_5357446	0/0	c0016	939	1	1	0	0	0	0	copy fasta	OR51B6	chr11	5346508	5357446
OR51B6_chr11_5346508_5357446	0/0	c0017	939	1	0	0	1	0	0	copy fasta	OR51B6	chr11	5346508	5357446
OR51C1P_chr11_4685423_4702853	1/0	c0001	939	278	64	42	141	8	22	copy fasta	OR51C1P	chr11	4685423	4702853
OR51C1P_chr11_4685423_4702853	0/1	c0002	939	97	2	16	65	6	7	copy fasta	OR51C1P	chr11	4685423	4702853
OR51C1P_chr11_4685423_4702853	0/0	c0003	939	58	18	20	6	4	10	copy fasta	OR51C1P	chr11	4685423	4702853
OR51C1P_chr11_4685423_4702853	0/0	c0004	939	6	6	0	0	0	0	copy fasta	OR51C1P	chr11	4685423	4702853
OR51C1P_chr11_4685423_4702853	0/0	c0005	939	3	0	0	0	0	3	copy fasta	OR51C1P	chr11	4685423	4702853
OR51C1P_chr11_4685423_4702853	0/0	c0006	939	3	0	0	3	0	0	copy fasta	OR51C1P	chr11	4685423	4702853
OR51C1P_chr11_4685423_4702853	0/0	c0007	939	2	0	0	0	0	2	copy fasta	OR51C1P	chr11	4685423	4702853
OR51C1P_chr11_4685423_4702853	0/0	c0008	939	1	0	1	0	0	0	copy fasta	OR51C1P	chr11	4685423	4702853
OR51C1P_chr11_4685423_4702853	0/0	c0009	939	1	0	0	1	0	0	copy fasta	OR51C1P	chr11	4685423	4702853
OR51C1P_chr11_4685423_4702853	0/0	c0010	939	1	1	0	0	0	0	copy fasta	OR51C1P	chr11	4685423	4702853
OR51C1P_chr11_4685423_4702853	0/0	c0011	939	1	1	0	0	0	0	copy fasta	OR51C1P	chr11	4685423	4702853
OR51C1P_chr11_4685423_4702853	0/0	c0012	939	1	1	0	0	0	0	copy fasta	OR51C1P	chr11	4685423	4702853
OR51C1P_chr11_4685423_4702853	0/0	c0013	939	1	0	1	0	0	0	copy fasta	OR51C1P	chr11	4685423	4702853
OR51C1P_chr11_4685423_4702853	0/0	c0014	939	1	0	0	1	0	0	copy fasta	OR51C1P	chr11	4685423	4702853
OR51C1P_chr11_4685423_4702853	0/0	c0015	939	1	0	0	1	0	0	copy fasta	OR51C1P	chr11	4685423	4702853