JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
OR51C1P_chr11_4685423_4702853	0/0	c0016	939	1	1	0	0	0	0	copy fasta	OR51C1P	chr11	4685423	4702853
OR51D1_chr11_4632477_4648060	1/0	c0001	975	393	88	55	206	11	32	copy fasta	OR51D1	chr11	4632477	4648060
OR51D1_chr11_4632477_4648060	0/1	c0002	975	29	0	13	0	4	11	copy fasta	OR51D1	chr11	4632477	4648060
OR51D1_chr11_4632477_4648060	0/0	c0003	975	11	0	10	0	0	1	copy fasta	OR51D1	chr11	4632477	4648060
OR51D1_chr11_4632477_4648060	0/0	c0004	975	5	5	0	0	0	0	copy fasta	OR51D1	chr11	4632477	4648060
OR51D1_chr11_4632477_4648060	0/0	c0005	975	2	2	0	0	0	0	copy fasta	OR51D1	chr11	4632477	4648060
OR51D1_chr11_4632477_4648060	0/0	c0006	975	2	1	0	0	1	0	copy fasta	OR51D1	chr11	4632477	4648060
OR51D1_chr11_4632477_4648060	0/0	c0007	975	1	0	1	0	0	0	copy fasta	OR51D1	chr11	4632477	4648060
OR51D1_chr11_4632477_4648060	0/0	c0008	975	1	0	1	0	0	0	copy fasta	OR51D1	chr11	4632477	4648060
OR51D1_chr11_4632477_4648060	0/0	c0009	975	1	1	0	0	0	0	copy fasta	OR51D1	chr11	4632477	4648060
OR51D1_chr11_4632477_4648060	0/0	c0010	975	1	1	0	0	0	0	copy fasta	OR51D1	chr11	4632477	4648060
OR51E1_chr11_4638982_4660488	1/0	c0001	957	350	75	42	201	9	22	copy fasta	OR51E1	chr11	4638982	4660488
OR51E1_chr11_4638982_4660488	0/1	c0002	957	81	19	22	14	5	20	copy fasta	OR51E1	chr11	4638982	4660488
OR51E1_chr11_4638982_4660488	0/0	c0003	957	15	0	11	0	1	3	copy fasta	OR51E1	chr11	4638982	4660488
OR51E1_chr11_4638982_4660488	0/0	c0004	957	1	0	0	1	0	0	copy fasta	OR51E1	chr11	4638982	4660488
OR51E1_chr11_4638982_4660488	0/0	c0005	957	1	0	0	1	0	0	copy fasta	OR51E1	chr11	4638982	4660488
OR51E1_chr11_4638982_4660488	0/0	c0006	957	1	0	0	0	1	0	copy fasta	OR51E1	chr11	4638982	4660488
OR51E1_chr11_4638982_4660488	0/0	c0007	957	1	0	1	0	0	0	copy fasta	OR51E1	chr11	4638982	4660488
OR51E1_chr11_4638982_4660488	0/0	c0008	957	1	0	0	0	0	1	copy fasta	OR51E1	chr11	4638982	4660488
OR51E1_chr11_4638982_4660488	0/0	c0009	957	1	0	0	1	0	0	copy fasta	OR51E1	chr11	4638982	4660488
OR51E2_chr11_4675171_4702853	0/1	c0001	963	352	58	65	171	15	42	copy fasta	OR51E2	chr11	4675171	4702853
OR51E2_chr11_4675171_4702853	0/0	c0002	963	51	8	8	34	0	1	copy fasta	OR51E2	chr11	4675171	4702853
OR51E2_chr11_4675171_4702853	1/0	c0003	963	46	31	5	5	1	3	copy fasta	OR51E2	chr11	4675171	4702853
OR51E2_chr11_4675171_4702853	0/0	c0004	963	1	0	0	1	0	0	copy fasta	OR51E2	chr11	4675171	4702853
OR51E2_chr11_4675171_4702853	0/0	c0005	963	1	0	1	0	0	0	copy fasta	OR51E2	chr11	4675171	4702853
OR51E2_chr11_4675171_4702853	0/0	c0006	963	1	0	1	0	0	0	copy fasta	OR51E2	chr11	4675171	4702853
OR51E2_chr11_4675171_4702853	0/0	c0007	963	1	1	0	0	0	0	copy fasta	OR51E2	chr11	4675171	4702853
OR51E2_chr11_4675171_4702853	0/0	c0008	963	1	0	0	0	1	0	copy fasta	OR51E2	chr11	4675171	4702853
OR51E2_chr11_4675171_4702853	0/0	c0009	963	1	0	0	1	0	0	copy fasta	OR51E2	chr11	4675171	4702853
OR51E2_chr11_4675171_4702853	0/0	c0010	963	1	0	0	1	0	0	copy fasta	OR51E2	chr11	4675171	4702853
OR51E2_chr11_4675171_4702853	0/0	c0011	963	1	0	0	1	0	0	copy fasta	OR51E2	chr11	4675171	4702853
OR51E2_chr11_4675171_4702853	0/0	c0012	963	1	0	0	1	0	0	copy fasta	OR51E2	chr11	4675171	4702853
OR51E2_chr11_4675171_4702853	0/0	c0013	963	1	0	0	1	0	0	copy fasta	OR51E2	chr11	4675171	4702853
OR51E2_chr11_4675171_4702853	0/0	c0014	963	1	0	0	1	0	0	copy fasta	OR51E2	chr11	4675171	4702853
OR51E2_chr11_4675171_4702853	0/0	c0015	963	1	0	0	0	1	0	copy fasta	OR51E2	chr11	4675171	4702853
OR51E2_chr11_4675171_4702853	0/0	c0016	963	1	0	0	1	0	0	copy fasta	OR51E2	chr11	4675171	4702853
OR51F1_chr11_4763979_4774938	1/0	c0001	960	201	51	34	90	5	20	copy fasta	OR51F1	chr11	4763979	4774938
OR51F1_chr11_4763979_4774938	0/1	c0002	960	49	1	14	18	5	10	copy fasta	OR51F1	chr11	4763979	4774938
OR51F1_chr11_4763979_4774938	0/0	c0003	959	14	12	2	0	0	0	copy fasta	OR51F1	chr11	4763979	4774938
OR51F1_chr11_4763979_4774938	0/0	c0004	959	12	12	0	0	0	0	copy fasta	OR51F1	chr11	4763979	4774938
OR51F1_chr11_4763979_4774938	0/0	c0005	959	10	1	6	0	1	2	copy fasta	OR51F1	chr11	4763979	4774938
OR51F1_chr11_4763979_4774938	0/0	c0006	959	9	1	5	0	1	2	copy fasta	OR51F1	chr11	4763979	4774938
OR51F1_chr11_4763979_4774938	0/0	c0007	959	7	7	0	0	0	0	copy fasta	OR51F1	chr11	4763979	4774938
OR51F1_chr11_4763979_4774938	0/0	c0008	960	7	4	3	0	0	0	copy fasta	OR51F1	chr11	4763979	4774938
OR51F1_chr11_4763979_4774938	0/0	c0009	960	7	0	3	4	0	0	copy fasta	OR51F1	chr11	4763979	4774938
OR51F1_chr11_4763979_4774938	0/0	c0010	960	7	0	0	7	0	0	copy fasta	OR51F1	chr11	4763979	4774938
OR51F1_chr11_4763979_4774938	0/0	c0011	959	5	0	3	0	2	0	copy fasta	OR51F1	chr11	4763979	4774938
OR51F1_chr11_4763979_4774938	0/0	c0012	960	4	3	1	0	0	0	copy fasta	OR51F1	chr11	4763979	4774938
OR51F1_chr11_4763979_4774938	0/0	c0013	959	3	3	0	0	0	0	copy fasta	OR51F1	chr11	4763979	4774938
OR51F1_chr11_4763979_4774938	0/0	c0014	959	2	2	0	0	0	0	copy fasta	OR51F1	chr11	4763979	4774938