JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
OR51F1_chr11_4763979_4774938	0/0	c0015	960	1	1	0	0	0	0	copy fasta	OR51F1	chr11	4763979	4774938
OR51F1_chr11_4763979_4774938	0/0	c0016	959	1	1	0	0	0	0	copy fasta	OR51F1	chr11	4763979	4774938
OR51F1_chr11_4763979_4774938	0/0	c0017	959	1	0	1	0	0	0	copy fasta	OR51F1	chr11	4763979	4774938
OR51F1_chr11_4763979_4774938	0/0	c0018	959	1	1	0	0	0	0	copy fasta	OR51F1	chr11	4763979	4774938
OR51F1_chr11_4763979_4774938	0/0	c0019	960	1	0	0	1	0	0	copy fasta	OR51F1	chr11	4763979	4774938
OR51F2_chr11_4816321_4827456	1/1	c0001	993	352	67	62	172	11	38	copy fasta	OR51F2	chr11	4816321	4827456
OR51F2_chr11_4816321_4827456	0/0	c0002	993	20	12	6	0	0	2	copy fasta	OR51F2	chr11	4816321	4827456
OR51F2_chr11_4816321_4827456	0/0	c0003	993	10	9	1	0	0	0	copy fasta	OR51F2	chr11	4816321	4827456
OR51F2_chr11_4816321_4827456	0/0	c0004	993	8	2	4	0	0	2	copy fasta	OR51F2	chr11	4816321	4827456
OR51F2_chr11_4816321_4827456	0/0	c0005	993	7	0	4	0	3	0	copy fasta	OR51F2	chr11	4816321	4827456
OR51F2_chr11_4816321_4827456	0/0	c0006	1998	2	2	0	0	0	0	copy fasta	OR51F2	chr11	4816321	4827456
OR51F2_chr11_4816321_4827456	0/0	c0007	993	2	2	0	0	0	0	copy fasta	OR51F2	chr11	4816321	4827456
OR51F2_chr11_4816321_4827456	0/0	c0008	993	1	0	1	0	0	0	copy fasta	OR51F2	chr11	4816321	4827456
OR51F2_chr11_4816321_4827456	0/0	c0009	993	1	0	0	0	0	1	copy fasta	OR51F2	chr11	4816321	4827456
OR51F2_chr11_4816321_4827456	0/0	c0010	993	1	0	0	1	0	0	copy fasta	OR51F2	chr11	4816321	4827456
OR51F2_chr11_4816321_4827456	0/0	c0011	993	1	0	0	1	0	0	copy fasta	OR51F2	chr11	4816321	4827456
OR51F2_chr11_4816321_4827456	0/0	c0012	993	1	0	0	0	0	1	copy fasta	OR51F2	chr11	4816321	4827456
OR51G1_chr11_4918374_4929339	0/1	c0001	966	273	63	48	131	9	21	copy fasta	OR51G1	chr11	4918374	4929339
OR51G1_chr11_4918374_4929339	0/0	c0002	966	69	2	0	64	2	1	copy fasta	OR51G1	chr11	4918374	4929339
OR51G1_chr11_4918374_4929339	1/0	c0003	966	50	17	9	11	1	11	copy fasta	OR51G1	chr11	4918374	4929339
OR51G1_chr11_4918374_4929339	0/0	c0004	966	20	1	14	0	5	0	copy fasta	OR51G1	chr11	4918374	4929339
OR51G1_chr11_4918374_4929339	0/0	c0005	966	15	1	9	1	1	3	copy fasta	OR51G1	chr11	4918374	4929339
OR51G1_chr11_4918374_4929339	0/0	c0006	966	6	5	1	0	0	0	copy fasta	OR51G1	chr11	4918374	4929339
OR51G1_chr11_4918374_4929339	0/0	c0007	966	3	0	0	3	0	0	copy fasta	OR51G1	chr11	4918374	4929339
OR51G1_chr11_4918374_4929339	0/0	c0008	966	3	3	0	0	0	0	copy fasta	OR51G1	chr11	4918374	4929339
OR51G1_chr11_4918374_4929339	0/0	c0009	966	2	2	0	0	0	0	copy fasta	OR51G1	chr11	4918374	4929339
OR51G1_chr11_4918374_4929339	0/0	c0010	966	2	0	0	2	0	0	copy fasta	OR51G1	chr11	4918374	4929339
OR51G1_chr11_4918374_4929339	0/0	c0011	966	1	0	0	0	0	1	copy fasta	OR51G1	chr11	4918374	4929339
OR51G1_chr11_4918374_4929339	0/0	c0012	966	1	1	0	0	0	0	copy fasta	OR51G1	chr11	4918374	4929339
OR51G1_chr11_4918374_4929339	0/0	c0013	966	1	0	0	0	0	1	copy fasta	OR51G1	chr11	4918374	4929339
OR51G1_chr11_4918374_4929339	0/0	c0014	966	1	0	0	1	0	0	copy fasta	OR51G1	chr11	4918374	4929339
OR51G1_chr11_4918374_4929339	0/0	c0015	966	1	1	0	0	0	0	copy fasta	OR51G1	chr11	4918374	4929339
OR51G1_chr11_4918374_4929339	0/0	c0016	966	1	1	0	0	0	0	copy fasta	OR51G1	chr11	4918374	4929339
OR51G1_chr11_4918374_4929339	0/0	c0017	966	1	1	0	0	0	0	copy fasta	OR51G1	chr11	4918374	4929339
OR51G1_chr11_4918374_4929339	0/0	c0018	966	1	0	1	0	0	0	copy fasta	OR51G1	chr11	4918374	4929339
OR51G1_chr11_4918374_4929339	0/0	c0019	966	1	0	0	1	0	0	copy fasta	OR51G1	chr11	4918374	4929339
OR51G2_chr11_4907588_4924350	1/0	c0001	945	343	41	68	190	12	31	copy fasta	OR51G2	chr11	4907588	4924350
OR51G2_chr11_4907588_4924350	0/0	c0002	945	74	43	7	14	1	9	copy fasta	OR51G2	chr11	4907588	4924350
OR51G2_chr11_4907588_4924350	0/1	c0003	945	16	0	8	0	5	2	copy fasta	OR51G2	chr11	4907588	4924350
OR51G2_chr11_4907588_4924350	0/0	c0004	945	9	8	1	0	0	0	copy fasta	OR51G2	chr11	4907588	4924350
OR51G2_chr11_4907588_4924350	0/0	c0005	945	5	3	2	0	0	0	copy fasta	OR51G2	chr11	4907588	4924350
OR51G2_chr11_4907588_4924350	0/0	c0006	945	4	0	0	4	0	0	copy fasta	OR51G2	chr11	4907588	4924350
OR51G2_chr11_4907588_4924350	0/0	c0007	945	4	0	0	4	0	0	copy fasta	OR51G2	chr11	4907588	4924350
OR51G2_chr11_4907588_4924350	0/0	c0008	945	1	0	0	1	0	0	copy fasta	OR51G2	chr11	4907588	4924350
OR51G2_chr11_4907588_4924350	0/0	c0009	945	1	0	0	1	0	0	copy fasta	OR51G2	chr11	4907588	4924350
OR51G2_chr11_4907588_4924350	0/0	c0010	945	1	1	0	0	0	0	copy fasta	OR51G2	chr11	4907588	4924350
OR51I1_chr11_5435570_5446514	1/0	c0001	945	165	46	20	83	1	14	copy fasta	OR51I1	chr11	5435570	5446514
OR51I1_chr11_5435570_5446514	0/0	c0002	945	105	10	33	37	10	15	copy fasta	OR51I1	chr11	5435570	5446514
OR51I1_chr11_5435570_5446514	0/0	c0003	945	76	0	6	63	0	7	copy fasta	OR51I1	chr11	5435570	5446514
OR51I1_chr11_5435570_5446514	0/0	c0004	945	67	9	9	41	1	7	copy fasta	OR51I1	chr11	5435570	5446514