JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
OR51I1_chr11_5435570_5446514	0/1	c0005	945	15	3	8	0	2	1	copy fasta	OR51I1	chr11	5435570	5446514
OR51I1_chr11_5435570_5446514	0/0	c0006	945	10	9	1	0	0	0	copy fasta	OR51I1	chr11	5435570	5446514
OR51I1_chr11_5435570_5446514	0/0	c0007	945	7	3	4	0	0	0	copy fasta	OR51I1	chr11	5435570	5446514
OR51I1_chr11_5435570_5446514	0/0	c0008	945	6	4	2	0	0	0	copy fasta	OR51I1	chr11	5435570	5446514
OR51I1_chr11_5435570_5446514	0/0	c0009	945	5	4	1	0	0	0	copy fasta	OR51I1	chr11	5435570	5446514
OR51I1_chr11_5435570_5446514	0/0	c0010	945	3	3	0	0	0	0	copy fasta	OR51I1	chr11	5435570	5446514
OR51I1_chr11_5435570_5446514	0/0	c0011	945	3	3	0	0	0	0	copy fasta	OR51I1	chr11	5435570	5446514
OR51I1_chr11_5435570_5446514	0/0	c0012	945	3	3	0	0	0	0	copy fasta	OR51I1	chr11	5435570	5446514
OR51I1_chr11_5435570_5446514	0/0	c0013	945	2	0	2	0	0	0	copy fasta	OR51I1	chr11	5435570	5446514
OR51I1_chr11_5435570_5446514	0/0	c0014	945	1	0	0	1	0	0	copy fasta	OR51I1	chr11	5435570	5446514
OR51I1_chr11_5435570_5446514	0/0	c0015	945	1	0	0	0	0	1	copy fasta	OR51I1	chr11	5435570	5446514
OR51I1_chr11_5435570_5446514	0/0	c0016	945	1	1	0	0	0	0	copy fasta	OR51I1	chr11	5435570	5446514
OR51I1_chr11_5435570_5446514	0/0	c0017	945	1	0	0	0	0	1	copy fasta	OR51I1	chr11	5435570	5446514
OR51I1_chr11_5435570_5446514	0/0	c0018	945	1	0	0	1	0	0	copy fasta	OR51I1	chr11	5435570	5446514
OR51I2_chr11_5444323_5461518	1/0	c0001	939	175	27	26	98	4	19	copy fasta	OR51I2	chr11	5444323	5461518
OR51I2_chr11_5444323_5461518	0/0	c0002	939	110	8	14	68	4	16	copy fasta	OR51I2	chr11	5444323	5461518
OR51I2_chr11_5444323_5461518	0/1	c0003	941	56	4	25	13	6	7	copy fasta	OR51I2	chr11	5444323	5461518
OR51I2_chr11_5444323_5461518	0/0	c0004	939	48	1	7	37	0	3	copy fasta	OR51I2	chr11	5444323	5461518
OR51I2_chr11_5444323_5461518	0/0	c0005	939	26	23	3	0	0	0	copy fasta	OR51I2	chr11	5444323	5461518
OR51I2_chr11_5444323_5461518	0/0	c0006	938	23	21	2	0	0	0	copy fasta	OR51I2	chr11	5444323	5461518
OR51I2_chr11_5444323_5461518	0/0	c0007	939	17	0	2	11	1	3	copy fasta	OR51I2	chr11	5444323	5461518
OR51I2_chr11_5444323_5461518	0/0	c0008	939	7	6	1	0	0	0	copy fasta	OR51I2	chr11	5444323	5461518
OR51I2_chr11_5444323_5461518	0/0	c0009	939	4	4	0	0	0	0	copy fasta	OR51I2	chr11	5444323	5461518
OR51I2_chr11_5444323_5461518	0/0	c0010	939	3	1	0	0	0	2	copy fasta	OR51I2	chr11	5444323	5461518
OR51I2_chr11_5444323_5461518	0/0	c0011	938	2	2	0	0	0	0	copy fasta	OR51I2	chr11	5444323	5461518
OR51I2_chr11_5444323_5461518	0/0	c0012	939	2	1	1	0	0	0	copy fasta	OR51I2	chr11	5444323	5461518
OR51I2_chr11_5444323_5461518	0/0	c0013	939	1	0	1	0	0	0	copy fasta	OR51I2	chr11	5444323	5461518
OR51I2_chr11_5444323_5461518	0/0	c0014	939	1	0	0	1	0	0	copy fasta	OR51I2	chr11	5444323	5461518
OR51I2_chr11_5444323_5461518	0/0	c0015	939	1	0	0	0	1	0	copy fasta	OR51I2	chr11	5444323	5461518
OR51I2_chr11_5444323_5461518	0/0	c0016	939	1	0	0	1	0	0	copy fasta	OR51I2	chr11	5444323	5461518
OR51I2_chr11_5444323_5461518	0/0	c0017	939	1	1	0	0	0	0	copy fasta	OR51I2	chr11	5444323	5461518
OR51I2_chr11_5444323_5461518	0/0	c0018	939	1	1	0	0	0	0	copy fasta	OR51I2	chr11	5444323	5461518
OR51I2_chr11_5444323_5461518	0/0	c0019	939	1	0	0	1	0	0	copy fasta	OR51I2	chr11	5444323	5461518
OR51I2_chr11_5444323_5461518	0/0	c0020	939	1	0	0	1	0	0	copy fasta	OR51I2	chr11	5444323	5461518
OR51I2_chr11_5444323_5461518	0/0	c0021	939	1	0	0	1	0	0	copy fasta	OR51I2	chr11	5444323	5461518
OR51L1_chr11_4989851_5010536	0/1	c0001	948	218	55	39	89	10	24	copy fasta	OR51L1	chr11	4989851	5010536
OR51L1_chr11_4989851_5010536	1/0	c0002	948	107	8	13	78	0	7	copy fasta	OR51L1	chr11	4989851	5010536
OR51L1_chr11_4989851_5010536	0/0	c0003	948	79	23	12	24	5	15	copy fasta	OR51L1	chr11	4989851	5010536
OR51L1_chr11_4989851_5010536	0/0	c0004	948	38	0	9	26	0	3	copy fasta	OR51L1	chr11	4989851	5010536
OR51L1_chr11_4989851_5010536	0/0	c0005	948	17	0	13	2	1	1	copy fasta	OR51L1	chr11	4989851	5010536
OR51L1_chr11_4989851_5010536	0/0	c0006	948	6	6	0	0	0	0	copy fasta	OR51L1	chr11	4989851	5010536
OR51L1_chr11_4989851_5010536	0/0	c0007	948	2	2	0	0	0	0	copy fasta	OR51L1	chr11	4989851	5010536
OR51L1_chr11_4989851_5010536	0/0	c0008	948	1	1	0	0	0	0	copy fasta	OR51L1	chr11	4989851	5010536
OR51L1_chr11_4989851_5010536	0/0	c0009	948	1	1	0	0	0	0	copy fasta	OR51L1	chr11	4989851	5010536
OR51L1_chr11_4989851_5010536	0/0	c0010	948	1	0	0	1	0	0	copy fasta	OR51L1	chr11	4989851	5010536
OR51M1_chr11_5378812_5398263	0/0	c0001	981	150	33	40	63	3	11	copy fasta	OR51M1	chr11	5378812	5398263
OR51M1_chr11_5378812_5398263	1/0	c0002	981	143	14	19	91	5	13	copy fasta	OR51M1	chr11	5378812	5398263
OR51M1_chr11_5378812_5398263	0/1	c0003	981	136	35	20	54	4	22	copy fasta	OR51M1	chr11	5378812	5398263
OR51M1_chr11_5378812_5398263	0/0	c0004	981	7	7	0	0	0	0	copy fasta	OR51M1	chr11	5378812	5398263
OR51M1_chr11_5378812_5398263	0/0	c0005	981	4	4	0	0	0	0	copy fasta	OR51M1	chr11	5378812	5398263