JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
OR51M1_chr11_5378812_5398263	0/0	c0006	981	3	3	0	0	0	0	copy fasta	OR51M1	chr11	5378812	5398263
OR51M1_chr11_5378812_5398263	0/0	c0007	981	2	0	2	0	0	0	copy fasta	OR51M1	chr11	5378812	5398263
OR51M1_chr11_5378812_5398263	0/0	c0008	981	1	0	0	1	0	0	copy fasta	OR51M1	chr11	5378812	5398263
OR51M1_chr11_5378812_5398263	0/0	c0009	981	1	0	1	0	0	0	copy fasta	OR51M1	chr11	5378812	5398263
OR51M1_chr11_5378812_5398263	0/0	c0010	981	1	0	0	1	0	0	copy fasta	OR51M1	chr11	5378812	5398263
OR51M1_chr11_5378812_5398263	0/0	c0011	981	1	0	0	1	0	0	copy fasta	OR51M1	chr11	5378812	5398263
OR51M1_chr11_5378812_5398263	0/0	c0012	981	1	0	0	1	0	0	copy fasta	OR51M1	chr11	5378812	5398263
OR51Q1_chr11_5417111_5428206	1/0	c0001	954	201	57	46	66	10	21	copy fasta	OR51Q1	chr11	5417111	5428206
OR51Q1_chr11_5417111_5428206	0/1	c0002	954	120	24	20	51	4	20	copy fasta	OR51Q1	chr11	5417111	5428206
OR51Q1_chr11_5417111_5428206	0/0	c0003	954	93	4	6	76	0	7	copy fasta	OR51Q1	chr11	5417111	5428206
OR51Q1_chr11_5417111_5428206	0/0	c0004	954	23	0	6	17	0	0	copy fasta	OR51Q1	chr11	5417111	5428206
OR51Q1_chr11_5417111_5428206	0/0	c0005	954	5	5	0	0	0	0	copy fasta	OR51Q1	chr11	5417111	5428206
OR51Q1_chr11_5417111_5428206	0/0	c0006	954	3	3	0	0	0	0	copy fasta	OR51Q1	chr11	5417111	5428206
OR51Q1_chr11_5417111_5428206	0/0	c0007	954	2	0	0	2	0	0	copy fasta	OR51Q1	chr11	5417111	5428206
OR51Q1_chr11_5417111_5428206	0/0	c0008	954	2	0	0	0	2	0	copy fasta	OR51Q1	chr11	5417111	5428206
OR51Q1_chr11_5417111_5428206	0/0	c0009	954	2	2	0	0	0	0	copy fasta	OR51Q1	chr11	5417111	5428206
OR51Q1_chr11_5417111_5428206	0/0	c0010	954	2	0	2	0	0	0	copy fasta	OR51Q1	chr11	5417111	5428206
OR51Q1_chr11_5417111_5428206	0/0	c0011	954	1	1	0	0	0	0	copy fasta	OR51Q1	chr11	5417111	5428206
OR51S1_chr11_4843237_4854208	1/0	c0001	972	243	32	39	152	5	14	copy fasta	OR51S1	chr11	4843237	4854208
OR51S1_chr11_4843237_4854208	0/1	c0002	972	46	6	15	4	7	13	copy fasta	OR51S1	chr11	4843237	4854208
OR51S1_chr11_4843237_4854208	0/0	c0003	972	43	2	5	17	2	17	copy fasta	OR51S1	chr11	4843237	4854208
OR51S1_chr11_4843237_4854208	0/0	c0004	972	23	22	1	0	0	0	copy fasta	OR51S1	chr11	4843237	4854208
OR51S1_chr11_4843237_4854208	0/0	c0005	972	18	1	11	0	4	2	copy fasta	OR51S1	chr11	4843237	4854208
OR51S1_chr11_4843237_4854208	0/0	c0006	972	14	13	1	0	0	0	copy fasta	OR51S1	chr11	4843237	4854208
OR51S1_chr11_4843237_4854208	0/0	c0007	972	8	6	2	0	0	0	copy fasta	OR51S1	chr11	4843237	4854208
OR51S1_chr11_4843237_4854208	0/0	c0008	972	7	7	0	0	0	0	copy fasta	OR51S1	chr11	4843237	4854208
OR51S1_chr11_4843237_4854208	0/0	c0009	972	2	0	0	2	0	0	copy fasta	OR51S1	chr11	4843237	4854208
OR51S1_chr11_4843237_4854208	0/0	c0010	972	2	0	0	2	0	0	copy fasta	OR51S1	chr11	4843237	4854208
OR51S1_chr11_4843237_4854208	0/0	c0011	972	2	2	0	0	0	0	copy fasta	OR51S1	chr11	4843237	4854208
OR51S1_chr11_4843237_4854208	0/0	c0012	972	2	0	0	2	0	0	copy fasta	OR51S1	chr11	4843237	4854208
OR51S1_chr11_4843237_4854208	0/0	c0013	972	1	1	0	0	0	0	copy fasta	OR51S1	chr11	4843237	4854208
OR51S1_chr11_4843237_4854208	0/0	c0014	972	1	0	0	1	0	0	copy fasta	OR51S1	chr11	4843237	4854208
OR51S1_chr11_4843237_4854208	0/0	c0015	972	1	1	0	0	0	0	copy fasta	OR51S1	chr11	4843237	4854208
OR51S1_chr11_4843237_4854208	0/0	c0016	972	1	1	0	0	0	0	copy fasta	OR51S1	chr11	4843237	4854208
OR51T1_chr11_4876900_4887883	1/1	c0001	984	403	81	80	187	16	37	copy fasta	OR51T1	chr11	4876900	4887883
OR51T1_chr11_4876900_4887883	0/0	c0002	984	5	5	0	0	0	0	copy fasta	OR51T1	chr11	4876900	4887883
OR51T1_chr11_4876900_4887883	0/0	c0003	984	4	4	0	0	0	0	copy fasta	OR51T1	chr11	4876900	4887883
OR51T1_chr11_4876900_4887883	0/0	c0004	984	3	3	0	0	0	0	copy fasta	OR51T1	chr11	4876900	4887883
OR51T1_chr11_4876900_4887883	0/0	c0005	984	2	0	0	0	0	2	copy fasta	OR51T1	chr11	4876900	4887883
OR51T1_chr11_4876900_4887883	0/0	c0006	984	1	0	0	1	0	0	copy fasta	OR51T1	chr11	4876900	4887883
OR51T1_chr11_4876900_4887883	0/0	c0007	984	1	1	0	0	0	0	copy fasta	OR51T1	chr11	4876900	4887883
OR51T1_chr11_4876900_4887883	0/0	c0008	984	1	1	0	0	0	0	copy fasta	OR51T1	chr11	4876900	4887883
OR51T1_chr11_4876900_4887883	0/0	c0009	984	1	0	0	0	0	1	copy fasta	OR51T1	chr11	4876900	4887883
OR51T1_chr11_4876900_4887883	0/0	c0010	984	1	1	0	0	0	0	copy fasta	OR51T1	chr11	4876900	4887883
OR51T1_chr11_4876900_4887883	0/0	c0011	984	1	0	0	1	0	0	copy fasta	OR51T1	chr11	4876900	4887883
OR51T1_chr11_4876900_4887883	0/0	c0012	984	1	0	0	1	0	0	copy fasta	OR51T1	chr11	4876900	4887883
OR51T1_chr11_4876900_4887883	0/0	c0013	984	1	1	0	0	0	0	copy fasta	OR51T1	chr11	4876900	4887883
OR51T1_chr11_4876900_4887883	0/0	c0014	984	1	1	0	0	0	0	copy fasta	OR51T1	chr11	4876900	4887883
OR51V1_chr11_5194735_5205682	1/0	c0001	948	162	19	26	95	2	19	copy fasta	OR51V1	chr11	5194735	5205682
OR51V1_chr11_5194735_5205682	0/0	c0002	948	129	21	16	74	6	12	copy fasta	OR51V1	chr11	5194735	5205682