JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
OR51V1_chr11_5194735_5205682	0/1	c0003	948	120	25	37	35	8	14	copy fasta	OR51V1	chr11	5194735	5205682
OR51V1_chr11_5194735_5205682	0/0	c0004	948	9	8	1	0	0	0	copy fasta	OR51V1	chr11	5194735	5205682
OR51V1_chr11_5194735_5205682	0/0	c0005	944	7	7	0	0	0	0	copy fasta	OR51V1	chr11	5194735	5205682
OR51V1_chr11_5194735_5205682	0/0	c0006	944	5	5	0	0	0	0	copy fasta	OR51V1	chr11	5194735	5205682
OR51V1_chr11_5194735_5205682	0/0	c0007	948	5	3	0	0	0	2	copy fasta	OR51V1	chr11	5194735	5205682
OR51V1_chr11_5194735_5205682	0/0	c0008	948	3	3	0	0	0	0	copy fasta	OR51V1	chr11	5194735	5205682
OR51V1_chr11_5194735_5205682	0/0	c0009	948	2	0	0	2	0	0	copy fasta	OR51V1	chr11	5194735	5205682
OR51V1_chr11_5194735_5205682	0/0	c0010	948	1	0	0	1	0	0	copy fasta	OR51V1	chr11	5194735	5205682
OR51V1_chr11_5194735_5205682	0/0	c0011	948	1	1	0	0	0	0	copy fasta	OR51V1	chr11	5194735	5205682
OR51V1_chr11_5194735_5205682	0/0	c0012	948	1	0	0	0	0	1	copy fasta	OR51V1	chr11	5194735	5205682
OR51V1_chr11_5194735_5205682	0/0	c0013	948	1	0	0	1	0	0	copy fasta	OR51V1	chr11	5194735	5205682
OR52A1_chr11_5141824_5159757	0/1	c0001	939	322	71	48	165	9	28	copy fasta	OR52A1	chr11	5141824	5159757
OR52A1_chr11_5141824_5159757	0/0	c0002	940	65	12	27	6	4	16	copy fasta	OR52A1	chr11	5141824	5159757
OR52A1_chr11_5141824_5159757	0/0	c0003	939	29	0	3	23	1	2	copy fasta	OR52A1	chr11	5141824	5159757
OR52A1_chr11_5141824_5159757	1/0	c0004	939	11	8	2	0	0	0	copy fasta	OR52A1	chr11	5141824	5159757
OR52A1_chr11_5141824_5159757	0/0	c0005	939	4	3	1	0	0	0	copy fasta	OR52A1	chr11	5141824	5159757
OR52A1_chr11_5141824_5159757	0/0	c0006	939	3	3	0	0	0	0	copy fasta	OR52A1	chr11	5141824	5159757
OR52A1_chr11_5141824_5159757	0/0	c0007	907	1	0	0	1	0	0	copy fasta	OR52A1	chr11	5141824	5159757
OR52A1_chr11_5141824_5159757	0/0	c0008	939	1	0	0	1	0	0	copy fasta	OR52A1	chr11	5141824	5159757
OR52A1_chr11_5141824_5159757	0/0	c0009	939	1	1	0	0	0	0	copy fasta	OR52A1	chr11	5141824	5159757
OR52A1_chr11_5141824_5159757	0/0	c0010	939	1	0	1	0	0	0	copy fasta	OR52A1	chr11	5141824	5159757
OR52A5_chr11_5123776_5143356	1/0	c0001	951	276	67	59	98	14	37	copy fasta	OR52A5	chr11	5123776	5143356
OR52A5_chr11_5123776_5143356	0/1	c0002	951	102	1	15	75	1	9	copy fasta	OR52A5	chr11	5123776	5143356
OR52A5_chr11_5123776_5143356	0/0	c0003	951	18	17	1	0	0	0	copy fasta	OR52A5	chr11	5123776	5143356
OR52A5_chr11_5123776_5143356	0/0	c0004	951	4	0	0	4	0	0	copy fasta	OR52A5	chr11	5123776	5143356
OR52A5_chr11_5123776_5143356	0/0	c0005	951	4	3	1	0	0	0	copy fasta	OR52A5	chr11	5123776	5143356
OR52A5_chr11_5123776_5143356	0/0	c0006	951	3	3	0	0	0	0	copy fasta	OR52A5	chr11	5123776	5143356
OR52A5_chr11_5123776_5143356	0/0	c0007	951	2	0	0	2	0	0	copy fasta	OR52A5	chr11	5123776	5143356
OR52A5_chr11_5123776_5143356	0/0	c0008	951	2	2	0	0	0	0	copy fasta	OR52A5	chr11	5123776	5143356
OR52A5_chr11_5123776_5143356	0/0	c0009	951	2	2	0	0	0	0	copy fasta	OR52A5	chr11	5123776	5143356
OR52A5_chr11_5123776_5143356	0/0	c0010	951	1	0	0	0	1	0	copy fasta	OR52A5	chr11	5123776	5143356
OR52A5_chr11_5123776_5143356	0/0	c0011	937	1	0	0	1	0	0	copy fasta	OR52A5	chr11	5123776	5143356
OR52A5_chr11_5123776_5143356	0/0	c0012	951	1	0	0	1	0	0	copy fasta	OR52A5	chr11	5123776	5143356
OR52A5_chr11_5123776_5143356	0/0	c0013	951	1	0	0	1	0	0	copy fasta	OR52A5	chr11	5123776	5143356
OR52A5_chr11_5123776_5143356	0/0	c0014	951	1	1	0	0	0	0	copy fasta	OR52A5	chr11	5123776	5143356
OR52B2_chr11_6164355_6175326	0/0	c0000	0	1	1	0	0	0	0	copy fasta	OR52B2	chr11	6164355	6175326
OR52B2_chr11_6164355_6175326	1/1	c0001	972	376	71	66	181	17	39	copy fasta	OR52B2	chr11	6164355	6175326
OR52B2_chr11_6164355_6175326	0/0	c0002	972	11	4	2	5	0	0	copy fasta	OR52B2	chr11	6164355	6175326
OR52B2_chr11_6164355_6175326	0/0	c0003	972	9	9	0	0	0	0	copy fasta	OR52B2	chr11	6164355	6175326
OR52B2_chr11_6164355_6175326	0/0	c0004	972	4	3	1	0	0	0	copy fasta	OR52B2	chr11	6164355	6175326
OR52B2_chr11_6164355_6175326	0/0	c0005	972	2	0	2	0	0	0	copy fasta	OR52B2	chr11	6164355	6175326
OR52B2_chr11_6164355_6175326	0/0	c0006	972	2	2	0	0	0	0	copy fasta	OR52B2	chr11	6164355	6175326
OR52B2_chr11_6164355_6175326	0/0	c0007	972	1	1	0	0	0	0	copy fasta	OR52B2	chr11	6164355	6175326
OR52B2_chr11_6164355_6175326	0/0	c0008	972	1	0	0	1	0	0	copy fasta	OR52B2	chr11	6164355	6175326
OR52B2_chr11_6164355_6175326	0/0	c0009	972	1	0	1	0	0	0	copy fasta	OR52B2	chr11	6164355	6175326
OR52B2_chr11_6164355_6175326	0/0	c0010	972	1	1	0	0	0	0	copy fasta	OR52B2	chr11	6164355	6175326
OR52B2_chr11_6164355_6175326	0/0	c0011	972	1	0	0	0	1	0	copy fasta	OR52B2	chr11	6164355	6175326
OR52B2_chr11_6164355_6175326	0/0	c0012	972	1	0	0	1	0	0	copy fasta	OR52B2	chr11	6164355	6175326
OR52B2_chr11_6164355_6175326	0/0	c0013	972	1	0	1	0	0	0	copy fasta	OR52B2	chr11	6164355	6175326
OR52B2_chr11_6164355_6175326	0/0	c0014	972	1	0	0	0	0	1	copy fasta	OR52B2	chr11	6164355	6175326