JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
OR52B2_chr11_6164355_6175326	0/0	c0015	972	1	0	1	0	0	0	copy fasta	OR52B2	chr11	6164355	6175326
OR52B4_chr11_4362263_4373386	1/0	c0001	945	196	59	22	88	3	23	copy fasta	OR52B4	chr11	4362263	4373386
OR52B4_chr11_4362263_4373386	0/1	c0002	944	174	13	34	104	5	17	copy fasta	OR52B4	chr11	4362263	4373386
OR52B4_chr11_4362263_4373386	0/0	c0003	945	85	19	25	28	6	7	copy fasta	OR52B4	chr11	4362263	4373386
OR52B4_chr11_4362263_4373386	0/0	c0004	945	2	0	0	2	0	0	copy fasta	OR52B4	chr11	4362263	4373386
OR52B4_chr11_4362263_4373386	0/0	c0005	945	2	0	1	0	0	1	copy fasta	OR52B4	chr11	4362263	4373386
OR52B4_chr11_4362263_4373386	0/0	c0006	945	1	1	0	0	0	0	copy fasta	OR52B4	chr11	4362263	4373386
OR52B4_chr11_4362263_4373386	0/0	c0007	945	1	0	0	1	0	0	copy fasta	OR52B4	chr11	4362263	4373386
OR52B4_chr11_4362263_4373386	0/0	c0008	945	1	1	0	0	0	0	copy fasta	OR52B4	chr11	4362263	4373386
OR52B4_chr11_4362263_4373386	0/0	c0009	945	1	1	0	0	0	0	copy fasta	OR52B4	chr11	4362263	4373386
OR52B4_chr11_4362263_4373386	0/0	c0010	945	1	1	0	0	0	0	copy fasta	OR52B4	chr11	4362263	4373386
OR52B4_chr11_4362263_4373386	0/0	c0011	945	1	0	0	1	0	0	copy fasta	OR52B4	chr11	4362263	4373386
OR52B4_chr11_4362263_4373386	0/0	c0012	945	1	1	0	0	0	0	copy fasta	OR52B4	chr11	4362263	4373386
OR52B6_chr11_5575877_5586884	0/1	c0001	1008	287	60	44	151	5	26	copy fasta	OR52B6	chr11	5575877	5586884
OR52B6_chr11_5575877_5586884	0/0	c0002	1008	75	11	7	48	4	5	copy fasta	OR52B6	chr11	5575877	5586884
OR52B6_chr11_5575877_5586884	1/0	c0003	1008	32	4	9	1	5	12	copy fasta	OR52B6	chr11	5575877	5586884
OR52B6_chr11_5575877_5586884	0/0	c0004	1008	26	9	11	0	2	4	copy fasta	OR52B6	chr11	5575877	5586884
OR52B6_chr11_5575877_5586884	0/0	c0005	1008	15	3	10	2	0	0	copy fasta	OR52B6	chr11	5575877	5586884
OR52B6_chr11_5575877_5586884	0/0	c0006	1008	6	6	0	0	0	0	copy fasta	OR52B6	chr11	5575877	5586884
OR52B6_chr11_5575877_5586884	0/0	c0007	1008	4	4	0	0	0	0	copy fasta	OR52B6	chr11	5575877	5586884
OR52B6_chr11_5575877_5586884	0/0	c0008	1008	1	1	0	0	0	0	copy fasta	OR52B6	chr11	5575877	5586884
OR52B6_chr11_5575877_5586884	0/0	c0009	1008	1	1	0	0	0	0	copy fasta	OR52B6	chr11	5575877	5586884
OR52B6_chr11_5575877_5586884	0/0	c0010	1008	1	0	0	1	0	0	copy fasta	OR52B6	chr11	5575877	5586884
OR52B6_chr11_5575877_5586884	0/0	c0011	1008	1	0	0	1	0	0	copy fasta	OR52B6	chr11	5575877	5586884
OR52B6_chr11_5575877_5586884	0/0	c0012	1008	1	0	0	1	0	0	copy fasta	OR52B6	chr11	5575877	5586884
OR52B6_chr11_5575877_5586884	0/0	c0013	981	1	0	1	0	0	0	copy fasta	OR52B6	chr11	5575877	5586884
OR52B6_chr11_5575877_5586884	0/0	c0014	1008	1	0	0	0	0	1	copy fasta	OR52B6	chr11	5575877	5586884
OR52B6_chr11_5575877_5586884	0/0	c0015	1008	1	0	0	1	0	0	copy fasta	OR52B6	chr11	5575877	5586884
OR52B6_chr11_5575877_5586884	0/0	c0016	1008	1	1	0	0	0	0	copy fasta	OR52B6	chr11	5575877	5586884
OR52D1_chr11_5483685_5494749	0/0	c0001	957	119	35	15	52	2	15	copy fasta	OR52D1	chr11	5483685	5494749
OR52D1_chr11_5483685_5494749	0/0	c0002	957	73	12	10	44	1	6	copy fasta	OR52D1	chr11	5483685	5494749
OR52D1_chr11_5483685_5494749	0/0	c0003	954	71	1	5	56	0	9	copy fasta	OR52D1	chr11	5483685	5494749
OR52D1_chr11_5483685_5494749	0/1	c0004	957	49	4	22	12	4	6	copy fasta	OR52D1	chr11	5483685	5494749
OR52D1_chr11_5483685_5494749	1/0	c0005	957	45	11	6	25	2	0	copy fasta	OR52D1	chr11	5483685	5494749
OR52D1_chr11_5483685_5494749	0/0	c0006	961	45	5	12	21	4	3	copy fasta	OR52D1	chr11	5483685	5494749
OR52D1_chr11_5483685_5494749	0/0	c0007	957	20	8	3	0	3	6	copy fasta	OR52D1	chr11	5483685	5494749
OR52D1_chr11_5483685_5494749	0/0	c0008	954	9	0	0	9	0	0	copy fasta	OR52D1	chr11	5483685	5494749
OR52D1_chr11_5483685_5494749	0/0	c0009	957	7	6	1	0	0	0	copy fasta	OR52D1	chr11	5483685	5494749
OR52D1_chr11_5483685_5494749	0/0	c0010	957	6	0	0	6	0	0	copy fasta	OR52D1	chr11	5483685	5494749
OR52D1_chr11_5483685_5494749	0/0	c0011	957	6	6	0	0	0	0	copy fasta	OR52D1	chr11	5483685	5494749
OR52D1_chr11_5483685_5494749	0/0	c0012	954	6	0	6	0	0	0	copy fasta	OR52D1	chr11	5483685	5494749
OR52D1_chr11_5483685_5494749	0/0	c0013	957	3	3	0	0	0	0	copy fasta	OR52D1	chr11	5483685	5494749
OR52D1_chr11_5483685_5494749	0/0	c0014	957	3	2	1	0	0	0	copy fasta	OR52D1	chr11	5483685	5494749
OR52D1_chr11_5483685_5494749	0/0	c0015	957	2	1	1	0	0	0	copy fasta	OR52D1	chr11	5483685	5494749
OR52D1_chr11_5483685_5494749	0/0	c0016	957	1	0	0	0	0	1	copy fasta	OR52D1	chr11	5483685	5494749
OR52D1_chr11_5483685_5494749	0/0	c0017	961	1	0	1	0	0	0	copy fasta	OR52D1	chr11	5483685	5494749
OR52D1_chr11_5483685_5494749	0/0	c0018	961	1	0	1	0	0	0	copy fasta	OR52D1	chr11	5483685	5494749
OR52D1_chr11_5483685_5494749	0/0	c0019	961	1	0	0	1	0	0	copy fasta	OR52D1	chr11	5483685	5494749
OR52D1_chr11_5483685_5494749	0/0	c0020	957	1	0	0	1	0	0	copy fasta	OR52D1	chr11	5483685	5494749
OR52D1_chr11_5483685_5494749	0/0	c0021	954	1	0	0	1	0	0	copy fasta	OR52D1	chr11	5483685	5494749