JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
OR52E2_chr11_5053650_5064627	0/0	c0001	978	118	13	20	68	3	14	copy fasta	OR52E2	chr11	5053650	5064627
OR52E2_chr11_5053650_5064627	0/1	c0002	978	111	27	18	34	6	25	copy fasta	OR52E2	chr11	5053650	5064627
OR52E2_chr11_5053650_5064627	1/0	c0003	978	67	9	3	51	3	0	copy fasta	OR52E2	chr11	5053650	5064627
OR52E2_chr11_5053650_5064627	0/0	c0004	978	67	22	25	18	0	2	copy fasta	OR52E2	chr11	5053650	5064627
OR52E2_chr11_5053650_5064627	0/0	c0005	978	42	0	11	28	1	2	copy fasta	OR52E2	chr11	5053650	5064627
OR52E2_chr11_5053650_5064627	0/0	c0006	978	16	16	0	0	0	0	copy fasta	OR52E2	chr11	5053650	5064627
OR52E2_chr11_5053650_5064627	0/0	c0007	978	7	4	1	2	0	0	copy fasta	OR52E2	chr11	5053650	5064627
OR52E2_chr11_5053650_5064627	0/0	c0008	978	5	0	0	4	1	0	copy fasta	OR52E2	chr11	5053650	5064627
OR52E2_chr11_5053650_5064627	0/0	c0009	978	4	0	1	0	0	3	copy fasta	OR52E2	chr11	5053650	5064627
OR52E2_chr11_5053650_5064627	0/0	c0010	978	2	0	0	2	0	0	copy fasta	OR52E2	chr11	5053650	5064627
OR52E2_chr11_5053650_5064627	0/0	c0011	978	2	2	0	0	0	0	copy fasta	OR52E2	chr11	5053650	5064627
OR52E2_chr11_5053650_5064627	0/0	c0012	978	2	0	0	0	0	2	copy fasta	OR52E2	chr11	5053650	5064627
OR52E2_chr11_5053650_5064627	0/0	c0013	978	1	1	0	0	0	0	copy fasta	OR52E2	chr11	5053650	5064627
OR52E2_chr11_5053650_5064627	0/0	c0014	978	1	1	0	0	0	0	copy fasta	OR52E2	chr11	5053650	5064627
OR52E2_chr11_5053650_5064627	0/0	c0015	978	1	0	1	0	0	0	copy fasta	OR52E2	chr11	5053650	5064627
OR52E2_chr11_5053650_5064627	0/0	c0016	978	1	0	0	1	0	0	copy fasta	OR52E2	chr11	5053650	5064627
OR52E2_chr11_5053650_5064627	0/0	c0017	978	1	1	0	0	0	0	copy fasta	OR52E2	chr11	5053650	5064627
OR52E2_chr11_5053650_5064627	0/0	c0018	978	1	0	0	1	0	0	copy fasta	OR52E2	chr11	5053650	5064627
OR52E2_chr11_5053650_5064627	0/0	c0019	978	1	0	0	1	0	0	copy fasta	OR52E2	chr11	5053650	5064627
OR52E4_chr11_5875629_5892079	0/0	c0001	939	172	39	22	88	7	16	copy fasta	OR52E4	chr11	5875629	5892079
OR52E4_chr11_5875629_5892079	0/1	c0002	939	165	33	29	78	7	17	copy fasta	OR52E4	chr11	5875629	5892079
OR52E4_chr11_5875629_5892079	1/0	c0003	939	90	10	16	51	4	8	copy fasta	OR52E4	chr11	5875629	5892079
OR52E4_chr11_5875629_5892079	0/0	c0004	939	5	4	1	0	0	0	copy fasta	OR52E4	chr11	5875629	5892079
OR52E4_chr11_5875629_5892079	0/0	c0005	939	5	5	0	0	0	0	copy fasta	OR52E4	chr11	5875629	5892079
OR52E4_chr11_5875629_5892079	0/0	c0006	939	1	1	0	0	0	0	copy fasta	OR52E4	chr11	5875629	5892079
OR52E4_chr11_5875629_5892079	0/0	c0007	939	1	0	0	1	0	0	copy fasta	OR52E4	chr11	5875629	5892079
OR52E4_chr11_5875629_5892079	0/0	c0008	939	1	0	0	0	0	1	copy fasta	OR52E4	chr11	5875629	5892079
OR52E5_chr11_5888208_5907730	0/1	c0001	984	173	28	35	78	5	26	copy fasta	OR52E5	chr11	5888208	5907730
OR52E5_chr11_5888208_5907730	0/0	c0002	984	126	39	16	55	7	9	copy fasta	OR52E5	chr11	5888208	5907730
OR52E5_chr11_5888208_5907730	0/0	c0003	984	50	1	2	42	2	3	copy fasta	OR52E5	chr11	5888208	5907730
OR52E5_chr11_5888208_5907730	0/0	c0004	984	37	10	2	21	2	2	copy fasta	OR52E5	chr11	5888208	5907730
OR52E5_chr11_5888208_5907730	0/0	c0005	984	22	0	8	14	0	0	copy fasta	OR52E5	chr11	5888208	5907730
OR52E5_chr11_5888208_5907730	1/0	c0006	984	18	4	7	2	0	4	copy fasta	OR52E5	chr11	5888208	5907730
OR52E5_chr11_5888208_5907730	0/0	c0007	984	6	0	0	6	0	0	copy fasta	OR52E5	chr11	5888208	5907730
OR52E5_chr11_5888208_5907730	0/0	c0008	984	5	4	1	0	0	0	copy fasta	OR52E5	chr11	5888208	5907730
OR52E5_chr11_5888208_5907730	0/0	c0009	984	5	0	0	5	0	0	copy fasta	OR52E5	chr11	5888208	5907730
OR52E5_chr11_5888208_5907730	0/0	c0010	984	4	3	1	0	0	0	copy fasta	OR52E5	chr11	5888208	5907730
OR52E5_chr11_5888208_5907730	0/0	c0011	984	3	0	0	0	0	3	copy fasta	OR52E5	chr11	5888208	5907730
OR52E5_chr11_5888208_5907730	0/0	c0012	984	3	0	3	0	0	0	copy fasta	OR52E5	chr11	5888208	5907730
OR52E5_chr11_5888208_5907730	0/0	c0013	984	2	0	0	0	0	2	copy fasta	OR52E5	chr11	5888208	5907730
OR52E5_chr11_5888208_5907730	0/0	c0014	948	2	2	0	0	0	0	copy fasta	OR52E5	chr11	5888208	5907730
OR52E5_chr11_5888208_5907730	0/0	c0015	959	1	0	0	1	0	0	copy fasta	OR52E5	chr11	5888208	5907730
OR52E5_chr11_5888208_5907730	0/0	c0016	984	1	0	1	0	0	0	copy fasta	OR52E5	chr11	5888208	5907730
OR52E5_chr11_5888208_5907730	0/0	c0017	984	1	0	0	1	0	0	copy fasta	OR52E5	chr11	5888208	5907730
OR52E5_chr11_5888208_5907730	0/0	c0018	984	1	0	0	0	0	1	copy fasta	OR52E5	chr11	5888208	5907730
OR52E5_chr11_5888208_5907730	0/0	c0019	948	1	1	0	0	0	0	copy fasta	OR52E5	chr11	5888208	5907730
OR52E5_chr11_5888208_5907730	0/0	c0020	984	1	1	0	0	0	0	copy fasta	OR52E5	chr11	5888208	5907730
OR52E5_chr11_5888208_5907730	0/0	c0021	984	1	0	0	1	0	0	copy fasta	OR52E5	chr11	5888208	5907730
OR52E5_chr11_5888208_5907730	0/0	c0022	984	1	1	0	0	0	0	copy fasta	OR52E5	chr11	5888208	5907730
OR52E6_chr11_5835928_5846897	1/0	c0001	942	254	52	47	123	6	25	copy fasta	OR52E6	chr11	5835928	5846897