JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
OR52E6_chr11_5835928_5846897	0/0	c0002	942	150	21	18	90	5	16	copy fasta	OR52E6	chr11	5835928	5846897
OR52E6_chr11_5835928_5846897	0/0	c0003	942	13	0	5	0	5	3	copy fasta	OR52E6	chr11	5835928	5846897
OR52E6_chr11_5835928_5846897	0/0	c0004	942	6	5	1	0	0	0	copy fasta	OR52E6	chr11	5835928	5846897
OR52E6_chr11_5835928_5846897	0/0	c0005	942	4	0	0	4	0	0	copy fasta	OR52E6	chr11	5835928	5846897
OR52E6_chr11_5835928_5846897	0/0	c0006	942	4	4	0	0	0	0	copy fasta	OR52E6	chr11	5835928	5846897
OR52E6_chr11_5835928_5846897	0/0	c0007	942	3	1	2	0	0	0	copy fasta	OR52E6	chr11	5835928	5846897
OR52E6_chr11_5835928_5846897	0/0	c0008	942	1	0	1	0	0	0	copy fasta	OR52E6	chr11	5835928	5846897
OR52E6_chr11_5835928_5846897	0/0	c0009	942	1	0	0	0	0	1	copy fasta	OR52E6	chr11	5835928	5846897
OR52E6_chr11_5835928_5846897	0/0	c0010	942	1	1	0	0	0	0	copy fasta	OR52E6	chr11	5835928	5846897
OR52E6_chr11_5835928_5846897	0/0	c0011	942	1	0	1	0	0	0	copy fasta	OR52E6	chr11	5835928	5846897
OR52E6_chr11_5835928_5846897	0/0	c0012	942	1	1	0	0	0	0	copy fasta	OR52E6	chr11	5835928	5846897
OR52E6_chr11_5835928_5846897	0/0	c0013	942	1	0	1	0	0	0	copy fasta	OR52E6	chr11	5835928	5846897
OR52E6_chr11_5835928_5846897	0/1	c0014	942	1	0	0	0	0	0	copy fasta	OR52E6	chr11	5835928	5846897
OR52E6_chr11_5835928_5846897	0/0	c0015	942	1	1	0	0	0	0	copy fasta	OR52E6	chr11	5835928	5846897
OR52E6_chr11_5835928_5846897	0/0	c0016	942	1	0	1	0	0	0	copy fasta	OR52E6	chr11	5835928	5846897
OR52E6_chr11_5835928_5846897	0/0	c0017	942	1	0	0	1	0	0	copy fasta	OR52E6	chr11	5835928	5846897
OR52E6_chr11_5835928_5846897	0/0	c0018	942	1	0	0	0	0	1	copy fasta	OR52E6	chr11	5835928	5846897
OR52E6_chr11_5835928_5846897	0/0	c0019	942	1	1	0	0	0	0	copy fasta	OR52E6	chr11	5835928	5846897
OR52E6_chr11_5835928_5846897	0/0	c0020	942	1	1	0	0	0	0	copy fasta	OR52E6	chr11	5835928	5846897
OR52E6_chr11_5835928_5846897	0/0	c0021	942	1	1	0	0	0	0	copy fasta	OR52E6	chr11	5835928	5846897
OR52E6_chr11_5835928_5846897	0/0	c0022	942	1	0	1	0	0	0	copy fasta	OR52E6	chr11	5835928	5846897
OR52E6_chr11_5835928_5846897	0/0	c0023	942	1	1	0	0	0	0	copy fasta	OR52E6	chr11	5835928	5846897
OR52E8_chr11_5851749_5862690	0/0	c0000	0	12	11	1	0	0	0	copy fasta	OR52E8	chr11	5851749	5862690
OR52E8_chr11_5851749_5862690	1/0	c0001	942	226	30	33	128	11	23	copy fasta	OR52E8	chr11	5851749	5862690
OR52E8_chr11_5851749_5862690	0/1	c0002	942	151	31	32	62	5	20	copy fasta	OR52E8	chr11	5851749	5862690
OR52E8_chr11_5851749_5862690	0/0	c0003	942	9	0	0	9	0	0	copy fasta	OR52E8	chr11	5851749	5862690
OR52E8_chr11_5851749_5862690	0/0	c0004	942	6	0	0	6	0	0	copy fasta	OR52E8	chr11	5851749	5862690
OR52E8_chr11_5851749_5862690	0/0	c0005	942	5	4	1	0	0	0	copy fasta	OR52E8	chr11	5851749	5862690
OR52E8_chr11_5851749_5862690	0/0	c0006	942	5	0	0	5	0	0	copy fasta	OR52E8	chr11	5851749	5862690
OR52E8_chr11_5851749_5862690	0/0	c0007	942	5	0	4	0	0	1	copy fasta	OR52E8	chr11	5851749	5862690
OR52E8_chr11_5851749_5862690	0/0	c0008	942	4	4	0	0	0	0	copy fasta	OR52E8	chr11	5851749	5862690
OR52E8_chr11_5851749_5862690	0/0	c0009	942	3	0	3	0	0	0	copy fasta	OR52E8	chr11	5851749	5862690
OR52E8_chr11_5851749_5862690	0/0	c0010	942	2	1	1	0	0	0	copy fasta	OR52E8	chr11	5851749	5862690
OR52E8_chr11_5851749_5862690	0/0	c0011	942	1	0	0	1	0	0	copy fasta	OR52E8	chr11	5851749	5862690
OR52E8_chr11_5851749_5862690	0/0	c0012	942	1	0	1	0	0	0	copy fasta	OR52E8	chr11	5851749	5862690
OR52E8_chr11_5851749_5862690	0/0	c0013	942	1	1	0	0	0	0	copy fasta	OR52E8	chr11	5851749	5862690
OR52E8_chr11_5851749_5862690	0/0	c0014	942	1	0	0	1	0	0	copy fasta	OR52E8	chr11	5851749	5862690
OR52E8_chr11_5851749_5862690	0/0	c0015	942	1	1	0	0	0	0	copy fasta	OR52E8	chr11	5851749	5862690
OR52E8_chr11_5851749_5862690	0/0	c0016	942	1	0	0	1	0	0	copy fasta	OR52E8	chr11	5851749	5862690
OR52E8_chr11_5851749_5862690	0/0	c0017	942	1	0	0	1	0	0	copy fasta	OR52E8	chr11	5851749	5862690
OR52E8_chr11_5851749_5862690	0/0	c0018	942	1	1	0	0	0	0	copy fasta	OR52E8	chr11	5851749	5862690
OR52H1_chr11_5539561_5553540	0/0	c0001	945	127	14	17	75	2	19	copy fasta	OR52H1	chr11	5539561	5553540
OR52H1_chr11_5539561_5553540	0/1	c0002	945	118	33	43	21	8	12	copy fasta	OR52H1	chr11	5539561	5553540
OR52H1_chr11_5539561_5553540	0/0	c0003	945	95	16	10	62	1	6	copy fasta	OR52H1	chr11	5539561	5553540
OR52H1_chr11_5539561_5553540	1/0	c0004	945	45	5	10	22	3	4	copy fasta	OR52H1	chr11	5539561	5553540
OR52H1_chr11_5539561_5553540	0/0	c0005	945	9	8	1	0	0	0	copy fasta	OR52H1	chr11	5539561	5553540
OR52H1_chr11_5539561_5553540	0/0	c0006	945	7	7	0	0	0	0	copy fasta	OR52H1	chr11	5539561	5553540
OR52H1_chr11_5539561_5553540	0/0	c0007	945	5	5	0	0	0	0	copy fasta	OR52H1	chr11	5539561	5553540
OR52H1_chr11_5539561_5553540	0/0	c0008	945	3	3	0	0	0	0	copy fasta	OR52H1	chr11	5539561	5553540
OR52H1_chr11_5539561_5553540	0/0	c0009	945	3	2	1	0	0	0	copy fasta	OR52H1	chr11	5539561	5553540