JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
OR52H1_chr11_5539561_5553540	0/0	c0010	945	3	0	0	0	0	3	copy fasta	OR52H1	chr11	5539561	5553540
OR52H1_chr11_5539561_5553540	0/0	c0011	945	3	2	1	0	0	0	copy fasta	OR52H1	chr11	5539561	5553540
OR52H1_chr11_5539561_5553540	0/0	c0012	945	2	2	0	0	0	0	copy fasta	OR52H1	chr11	5539561	5553540
OR52H1_chr11_5539561_5553540	0/0	c0013	945	2	0	0	2	0	0	copy fasta	OR52H1	chr11	5539561	5553540
OR52H1_chr11_5539561_5553540	0/0	c0014	945	1	1	0	0	0	0	copy fasta	OR52H1	chr11	5539561	5553540
OR52H1_chr11_5539561_5553540	0/0	c0015	945	1	1	0	0	0	0	copy fasta	OR52H1	chr11	5539561	5553540
OR52H1_chr11_5539561_5553540	0/0	c0016	945	1	0	1	0	0	0	copy fasta	OR52H1	chr11	5539561	5553540
OR52H1_chr11_5539561_5553540	0/0	c0017	945	1	1	0	0	0	0	copy fasta	OR52H1	chr11	5539561	5553540
OR52H1_chr11_5539561_5553540	0/0	c0018	910	1	0	0	1	0	0	copy fasta	OR52H1	chr11	5539561	5553540
OR52H1_chr11_5539561_5553540	0/0	c0019	945	1	0	0	1	0	0	copy fasta	OR52H1	chr11	5539561	5553540
OR52I1_chr11_4589039_4600013	0/1	c0001	975	201	30	37	97	8	28	copy fasta	OR52I1	chr11	4589039	4600013
OR52I1_chr11_4589039_4600013	0/0	c0002	975	104	3	15	64	6	16	copy fasta	OR52I1	chr11	4589039	4600013
OR52I1_chr11_4589039_4600013	1/0	c0003	975	45	40	4	0	0	0	copy fasta	OR52I1	chr11	4589039	4600013
OR52I1_chr11_4589039_4600013	0/0	c0004	975	8	8	0	0	0	0	copy fasta	OR52I1	chr11	4589039	4600013
OR52I1_chr11_4589039_4600013	0/0	c0005	975	8	7	1	0	0	0	copy fasta	OR52I1	chr11	4589039	4600013
OR52I1_chr11_4589039_4600013	0/0	c0006	975	7	0	5	0	1	1	copy fasta	OR52I1	chr11	4589039	4600013
OR52I1_chr11_4589039_4600013	0/0	c0007	975	6	0	0	6	0	0	copy fasta	OR52I1	chr11	4589039	4600013
OR52I1_chr11_4589039_4600013	0/0	c0008	975	2	0	0	2	0	0	copy fasta	OR52I1	chr11	4589039	4600013
OR52I1_chr11_4589039_4600013	0/0	c0009	975	2	2	0	0	0	0	copy fasta	OR52I1	chr11	4589039	4600013
OR52I1_chr11_4589039_4600013	0/0	c0010	975	1	1	0	0	0	0	copy fasta	OR52I1	chr11	4589039	4600013
OR52I1_chr11_4589039_4600013	0/0	c0011	975	1	1	0	0	0	0	copy fasta	OR52I1	chr11	4589039	4600013
OR52I1_chr11_4589039_4600013	0/0	c0012	975	1	1	0	0	0	0	copy fasta	OR52I1	chr11	4589039	4600013
OR52I1_chr11_4589039_4600013	0/0	c0013	975	1	1	0	0	0	0	copy fasta	OR52I1	chr11	4589039	4600013
OR52I1_chr11_4589039_4600013	0/0	c0014	975	1	1	0	0	0	0	copy fasta	OR52I1	chr11	4589039	4600013
OR52I1_chr11_4589039_4600013	0/0	c0015	975	1	1	0	0	0	0	copy fasta	OR52I1	chr11	4589039	4600013
OR52I1_chr11_4589039_4600013	0/0	c0016	975	1	0	0	1	0	0	copy fasta	OR52I1	chr11	4589039	4600013
OR52I1_chr11_4589039_4600013	0/0	c0017	975	1	0	1	0	0	0	copy fasta	OR52I1	chr11	4589039	4600013
OR52I1_chr11_4589039_4600013	0/0	c0018	975	1	0	0	1	0	0	copy fasta	OR52I1	chr11	4589039	4600013
OR52I1_chr11_4589039_4600013	0/0	c0019	975	1	0	1	0	0	0	copy fasta	OR52I1	chr11	4589039	4600013
OR52I1_chr11_4589039_4600013	0/0	c0020	975	1	0	0	0	1	0	copy fasta	OR52I1	chr11	4589039	4600013
OR52I1_chr11_4589039_4600013	0/0	c0021	975	1	0	1	0	0	0	copy fasta	OR52I1	chr11	4589039	4600013
OR52I1_chr11_4589039_4600013	0/0	c0022	975	1	0	1	0	0	0	copy fasta	OR52I1	chr11	4589039	4600013
OR52I1_chr11_4589039_4600013	0/0	c0023	975	1	0	0	1	0	0	copy fasta	OR52I1	chr11	4589039	4600013
OR52I1_chr11_4589039_4600013	0/0	c0024	975	1	0	0	0	0	1	copy fasta	OR52I1	chr11	4589039	4600013
OR52I2_chr11_4576743_4598340	0/0	c0001	975	190	29	25	111	3	22	copy fasta	OR52I2	chr11	4576743	4598340
OR52I2_chr11_4576743_4598340	1/0	c0002	975	175	41	29	79	7	18	copy fasta	OR52I2	chr11	4576743	4598340
OR52I2_chr11_4576743_4598340	0/1	c0003	975	22	0	11	0	5	5	copy fasta	OR52I2	chr11	4576743	4598340
OR52I2_chr11_4576743_4598340	0/0	c0004	975	13	11	2	0	0	0	copy fasta	OR52I2	chr11	4576743	4598340
OR52I2_chr11_4576743_4598340	0/0	c0005	975	9	9	0	0	0	0	copy fasta	OR52I2	chr11	4576743	4598340
OR52I2_chr11_4576743_4598340	0/0	c0006	975	4	0	3	0	1	0	copy fasta	OR52I2	chr11	4576743	4598340
OR52I2_chr11_4576743_4598340	0/0	c0007	975	4	0	0	4	0	0	copy fasta	OR52I2	chr11	4576743	4598340
OR52I2_chr11_4576743_4598340	0/0	c0008	975	4	4	0	0	0	0	copy fasta	OR52I2	chr11	4576743	4598340
OR52I2_chr11_4576743_4598340	0/0	c0009	975	2	0	0	2	0	0	copy fasta	OR52I2	chr11	4576743	4598340
OR52I2_chr11_4576743_4598340	0/0	c0010	975	2	2	0	0	0	0	copy fasta	OR52I2	chr11	4576743	4598340
OR52I2_chr11_4576743_4598340	0/0	c0011	975	1	0	0	0	0	1	copy fasta	OR52I2	chr11	4576743	4598340
OR52J3_chr11_5041526_5052461	1/0	c0001	936	242	29	34	152	10	16	copy fasta	OR52J3	chr11	5041526	5052461
OR52J3_chr11_5041526_5052461	0/0	c0002	936	107	42	13	33	4	15	copy fasta	OR52J3	chr11	5041526	5052461
OR52J3_chr11_5041526_5052461	0/0	c0003	936	46	3	19	22	0	2	copy fasta	OR52J3	chr11	5041526	5052461
OR52J3_chr11_5041526_5052461	0/1	c0004	936	40	14	9	3	1	12	copy fasta	OR52J3	chr11	5041526	5052461
OR52J3_chr11_5041526_5052461	0/0	c0005	936	2	1	1	0	0	0	copy fasta	OR52J3	chr11	5041526	5052461