JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
OR52J3_chr11_5041526_5052461	0/0	c0006	936	1	0	0	1	0	0	copy fasta	OR52J3	chr11	5041526	5052461
OR52J3_chr11_5041526_5052461	0/0	c0007	936	1	1	0	0	0	0	copy fasta	OR52J3	chr11	5041526	5052461
OR52J3_chr11_5041526_5052461	0/0	c0008	936	1	0	1	0	0	0	copy fasta	OR52J3	chr11	5041526	5052461
OR52J3_chr11_5041526_5052461	0/0	c0009	936	1	0	0	1	0	0	copy fasta	OR52J3	chr11	5041526	5052461
OR52J3_chr11_5041526_5052461	0/0	c0010	936	1	1	0	0	0	0	copy fasta	OR52J3	chr11	5041526	5052461
OR52J3_chr11_5041526_5052461	0/0	c0011	936	1	0	0	0	0	1	copy fasta	OR52J3	chr11	5041526	5052461
OR52J3_chr11_5041526_5052461	0/0	c0012	936	1	0	0	0	0	1	copy fasta	OR52J3	chr11	5041526	5052461
OR52J3_chr11_5041526_5052461	0/0	c0013	936	1	1	0	0	0	0	copy fasta	OR52J3	chr11	5041526	5052461
OR52J3_chr11_5041526_5052461	0/0	c0014	936	1	0	0	0	1	0	copy fasta	OR52J3	chr11	5041526	5052461
OR52J3_chr11_5041526_5052461	0/0	c0015	936	1	0	1	0	0	0	copy fasta	OR52J3	chr11	5041526	5052461
OR52J3_chr11_5041526_5052461	0/0	c0016	936	1	0	0	0	0	1	copy fasta	OR52J3	chr11	5041526	5052461
OR52K1_chr11_4477646_4498497	1/0	c0001	945	223	33	57	93	14	25	copy fasta	OR52K1	chr11	4477646	4498497
OR52K1_chr11_4477646_4498497	0/0	c0002	945	109	14	10	64	4	17	copy fasta	OR52K1	chr11	4477646	4498497
OR52K1_chr11_4477646_4498497	0/0	c0003	945	58	37	4	15	0	2	copy fasta	OR52K1	chr11	4477646	4498497
OR52K1_chr11_4477646_4498497	0/0	c0004	945	4	4	0	0	0	0	copy fasta	OR52K1	chr11	4477646	4498497
OR52K1_chr11_4477646_4498497	0/0	c0005	945	2	0	0	2	0	0	copy fasta	OR52K1	chr11	4477646	4498497
OR52K1_chr11_4477646_4498497	0/0	c0006	945	2	2	0	0	0	0	copy fasta	OR52K1	chr11	4477646	4498497
OR52K1_chr11_4477646_4498497	0/0	c0007	945	1	0	0	1	0	0	copy fasta	OR52K1	chr11	4477646	4498497
OR52K1_chr11_4477646_4498497	0/0	c0008	945	1	0	0	1	0	0	copy fasta	OR52K1	chr11	4477646	4498497
OR52K1_chr11_4477646_4498497	0/0	c0009	945	1	0	0	1	0	0	copy fasta	OR52K1	chr11	4477646	4498497
OR52K1_chr11_4477646_4498497	0/0	c0010	945	1	0	1	0	0	0	copy fasta	OR52K1	chr11	4477646	4498497
OR52K1_chr11_4477646_4498497	0/0	c0011	945	1	0	0	1	0	0	copy fasta	OR52K1	chr11	4477646	4498497
OR52K1_chr11_4477646_4498497	0/1	c0012	945	1	0	0	0	0	0	copy fasta	OR52K1	chr11	4477646	4498497
OR52K2_chr11_4444295_4455361	1/1	c0001	945	382	31	73	214	18	44	copy fasta	OR52K2	chr11	4444295	4455361
OR52K2_chr11_4444295_4455361	0/0	c0002	945	40	22	4	12	0	2	copy fasta	OR52K2	chr11	4444295	4455361
OR52K2_chr11_4444295_4455361	0/0	c0003	945	21	20	1	0	0	0	copy fasta	OR52K2	chr11	4444295	4455361
OR52K2_chr11_4444295_4455361	0/0	c0004	945	10	9	1	0	0	0	copy fasta	OR52K2	chr11	4444295	4455361
OR52K2_chr11_4444295_4455361	0/0	c0005	945	10	10	0	0	0	0	copy fasta	OR52K2	chr11	4444295	4455361
OR52K2_chr11_4444295_4455361	0/0	c0006	945	4	4	0	0	0	0	copy fasta	OR52K2	chr11	4444295	4455361
OR52K2_chr11_4444295_4455361	0/0	c0007	945	2	0	2	0	0	0	copy fasta	OR52K2	chr11	4444295	4455361
OR52K2_chr11_4444295_4455361	0/0	c0008	945	2	0	0	0	0	2	copy fasta	OR52K2	chr11	4444295	4455361
OR52K2_chr11_4444295_4455361	0/0	c0009	945	2	1	1	0	0	0	copy fasta	OR52K2	chr11	4444295	4455361
OR52K2_chr11_4444295_4455361	0/0	c0010	945	1	1	0	0	0	0	copy fasta	OR52K2	chr11	4444295	4455361
OR52K2_chr11_4444295_4455361	0/0	c0011	945	1	0	1	0	0	0	copy fasta	OR52K2	chr11	4444295	4455361
OR52K2_chr11_4444295_4455361	0/0	c0012	945	1	0	1	0	0	0	copy fasta	OR52K2	chr11	4444295	4455361
OR52K2_chr11_4444295_4455361	0/0	c0013	945	1	1	0	0	0	0	copy fasta	OR52K2	chr11	4444295	4455361
OR52K2_chr11_4444295_4455361	0/0	c0014	945	1	1	0	0	0	0	copy fasta	OR52K2	chr11	4444295	4455361
OR52L1_chr11_5980892_5991985	1/1	c0001	990	248	40	44	123	9	30	copy fasta	OR52L1	chr11	5980892	5991985
OR52L1_chr11_5980892_5991985	0/0	c0002	990	87	1	18	61	3	4	copy fasta	OR52L1	chr11	5980892	5991985
OR52L1_chr11_5980892_5991985	0/0	c0003	990	32	2	3	19	0	8	copy fasta	OR52L1	chr11	5980892	5991985
OR52L1_chr11_5980892_5991985	0/0	c0004	990	21	17	2	0	0	2	copy fasta	OR52L1	chr11	5980892	5991985
OR52L1_chr11_5980892_5991985	0/0	c0005	990	18	5	3	3	4	3	copy fasta	OR52L1	chr11	5980892	5991985
OR52L1_chr11_5980892_5991985	0/0	c0006	990	11	11	0	0	0	0	copy fasta	OR52L1	chr11	5980892	5991985
OR52L1_chr11_5980892_5991985	0/0	c0007	990	11	11	0	0	0	0	copy fasta	OR52L1	chr11	5980892	5991985
OR52L1_chr11_5980892_5991985	0/0	c0008	990	5	4	1	0	0	0	copy fasta	OR52L1	chr11	5980892	5991985
OR52L1_chr11_5980892_5991985	0/0	c0009	990	5	0	3	0	2	0	copy fasta	OR52L1	chr11	5980892	5991985
OR52L1_chr11_5980892_5991985	0/0	c0010	990	3	0	2	0	0	1	copy fasta	OR52L1	chr11	5980892	5991985
OR52L1_chr11_5980892_5991985	0/0	c0011	990	2	0	0	2	0	0	copy fasta	OR52L1	chr11	5980892	5991985
OR52L1_chr11_5980892_5991985	0/0	c0012	990	1	0	1	0	0	0	copy fasta	OR52L1	chr11	5980892	5991985
OR52L1_chr11_5980892_5991985	0/0	c0013	990	1	0	1	0	0	0	copy fasta	OR52L1	chr11	5980892	5991985