JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
OR52L1_chr11_5980892_5991985	0/0	c0014	990	1	1	0	0	0	0	copy fasta	OR52L1	chr11	5980892	5991985
OR52M1_chr11_4540191_4551144	1/0	c0001	954	243	41	45	118	12	26	copy fasta	OR52M1	chr11	4540191	4551144
OR52M1_chr11_4540191_4551144	0/1	c0002	954	115	15	16	59	4	20	copy fasta	OR52M1	chr11	4540191	4551144
OR52M1_chr11_4540191_4551144	0/0	c0003	954	13	11	2	0	0	0	copy fasta	OR52M1	chr11	4540191	4551144
OR52M1_chr11_4540191_4551144	0/0	c0004	954	11	0	8	0	2	1	copy fasta	OR52M1	chr11	4540191	4551144
OR52M1_chr11_4540191_4551144	0/0	c0005	953	9	1	1	7	0	0	copy fasta	OR52M1	chr11	4540191	4551144
OR52M1_chr11_4540191_4551144	0/0	c0006	954	9	0	0	7	0	2	copy fasta	OR52M1	chr11	4540191	4551144
OR52M1_chr11_4540191_4551144	0/0	c0007	954	7	5	1	1	0	0	copy fasta	OR52M1	chr11	4540191	4551144
OR52M1_chr11_4540191_4551144	0/0	c0008	954	4	4	0	0	0	0	copy fasta	OR52M1	chr11	4540191	4551144
OR52M1_chr11_4540191_4551144	0/0	c0009	954	4	3	1	0	0	0	copy fasta	OR52M1	chr11	4540191	4551144
OR52M1_chr11_4540191_4551144	0/0	c0010	954	3	3	0	0	0	0	copy fasta	OR52M1	chr11	4540191	4551144
OR52M1_chr11_4540191_4551144	0/0	c0011	953	2	2	0	0	0	0	copy fasta	OR52M1	chr11	4540191	4551144
OR52M1_chr11_4540191_4551144	0/0	c0012	954	2	2	0	0	0	0	copy fasta	OR52M1	chr11	4540191	4551144
OR52M1_chr11_4540191_4551144	0/0	c0013	954	1	0	1	0	0	0	copy fasta	OR52M1	chr11	4540191	4551144
OR52M1_chr11_4540191_4551144	0/0	c0014	954	1	1	0	0	0	0	copy fasta	OR52M1	chr11	4540191	4551144
OR52M1_chr11_4540191_4551144	0/0	c0015	954	1	0	0	1	0	0	copy fasta	OR52M1	chr11	4540191	4551144
OR52M1_chr11_4540191_4551144	0/0	c0016	954	1	0	0	1	0	0	copy fasta	OR52M1	chr11	4540191	4551144
OR52M1_chr11_4540191_4551144	0/0	c0017	954	1	0	1	0	0	0	copy fasta	OR52M1	chr11	4540191	4551144
OR52M1_chr11_4540191_4551144	0/0	c0018	954	1	1	0	0	0	0	copy fasta	OR52M1	chr11	4540191	4551144
OR52M1_chr11_4540191_4551144	0/0	c0019	954	1	0	0	0	0	1	copy fasta	OR52M1	chr11	4540191	4551144
OR52M1_chr11_4540191_4551144	0/0	c0020	954	1	1	0	0	0	0	copy fasta	OR52M1	chr11	4540191	4551144
OR52N1_chr11_5781471_5796265	0/1	c0001	963	198	20	40	102	11	24	copy fasta	OR52N1	chr11	5781471	5796265
OR52N1_chr11_5781471_5796265	0/0	c0002	963	82	37	10	27	3	5	copy fasta	OR52N1	chr11	5781471	5796265
OR52N1_chr11_5781471_5796265	0/0	c0003	963	56	3	6	39	2	6	copy fasta	OR52N1	chr11	5781471	5796265
OR52N1_chr11_5781471_5796265	1/0	c0004	963	41	8	9	22	0	1	copy fasta	OR52N1	chr11	5781471	5796265
OR52N1_chr11_5781471_5796265	0/0	c0005	963	17	16	1	0	0	0	copy fasta	OR52N1	chr11	5781471	5796265
OR52N1_chr11_5781471_5796265	0/0	c0006	963	8	1	4	1	0	2	copy fasta	OR52N1	chr11	5781471	5796265
OR52N1_chr11_5781471_5796265	0/0	c0007	963	5	3	2	0	0	0	copy fasta	OR52N1	chr11	5781471	5796265
OR52N1_chr11_5781471_5796265	0/0	c0008	963	3	3	0	0	0	0	copy fasta	OR52N1	chr11	5781471	5796265
OR52N1_chr11_5781471_5796265	0/0	c0009	963	2	2	0	0	0	0	copy fasta	OR52N1	chr11	5781471	5796265
OR52N1_chr11_5781471_5796265	0/0	c0010	963	1	0	1	0	0	0	copy fasta	OR52N1	chr11	5781471	5796265
OR52N1_chr11_5781471_5796265	0/0	c0011	963	1	1	0	0	0	0	copy fasta	OR52N1	chr11	5781471	5796265
OR52N1_chr11_5781471_5796265	0/0	c0012	963	1	0	0	0	0	1	copy fasta	OR52N1	chr11	5781471	5796265
OR52N1_chr11_5781471_5796265	0/0	c0013	963	1	0	0	1	0	0	copy fasta	OR52N1	chr11	5781471	5796265
OR52N1_chr11_5781471_5796265	0/0	c0014	963	1	0	0	0	0	1	copy fasta	OR52N1	chr11	5781471	5796265
OR52N1_chr11_5781471_5796265	0/0	c0015	963	1	0	1	0	0	0	copy fasta	OR52N1	chr11	5781471	5796265
OR52N2_chr11_5803924_5826483	0/1	c0001	966	157	18	27	80	12	19	copy fasta	OR52N2	chr11	5803924	5826483
OR52N2_chr11_5803924_5826483	1/0	c0002	966	119	17	20	66	2	13	copy fasta	OR52N2	chr11	5803924	5826483
OR52N2_chr11_5803924_5826483	0/0	c0003	966	83	29	11	32	2	9	copy fasta	OR52N2	chr11	5803924	5826483
OR52N2_chr11_5803924_5826483	0/0	c0004	966	15	14	1	0	0	0	copy fasta	OR52N2	chr11	5803924	5826483
OR52N2_chr11_5803924_5826483	0/0	c0005	966	14	9	4	0	0	1	copy fasta	OR52N2	chr11	5803924	5826483
OR52N2_chr11_5803924_5826483	0/0	c0006	966	5	3	2	0	0	0	copy fasta	OR52N2	chr11	5803924	5826483
OR52N2_chr11_5803924_5826483	0/0	c0007	966	3	0	1	2	0	0	copy fasta	OR52N2	chr11	5803924	5826483
OR52N2_chr11_5803924_5826483	0/0	c0008	966	2	0	0	0	2	0	copy fasta	OR52N2	chr11	5803924	5826483
OR52N2_chr11_5803924_5826483	0/0	c0009	966	1	1	0	0	0	0	copy fasta	OR52N2	chr11	5803924	5826483
OR52N2_chr11_5803924_5826483	0/0	c0010	966	1	1	0	0	0	0	copy fasta	OR52N2	chr11	5803924	5826483
OR52N2_chr11_5803924_5826483	0/0	c0011	966	1	1	0	0	0	0	copy fasta	OR52N2	chr11	5803924	5826483
OR52N2_chr11_5803924_5826483	0/0	c0012	966	1	1	0	0	0	0	copy fasta	OR52N2	chr11	5803924	5826483
OR52N4_chr11_5749243_5760958	0/0	c0001	966	239	31	41	129	11	27	copy fasta	OR52N4	chr11	5749243	5760958
OR52N4_chr11_5749243_5760958	0/1	c0002	966	83	18	11	43	2	8	copy fasta	OR52N4	chr11	5749243	5760958