JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
OR52N4_chr11_5749243_5760958	0/0	c0003	966	66	12	11	33	3	7	copy fasta	OR52N4	chr11	5749243	5760958
OR52N4_chr11_5749243_5760958	1/0	c0004	966	44	7	12	23	0	1	copy fasta	OR52N4	chr11	5749243	5760958
OR52N4_chr11_5749243_5760958	0/0	c0005	966	17	16	1	0	0	0	copy fasta	OR52N4	chr11	5749243	5760958
OR52N4_chr11_5749243_5760958	0/0	c0006	966	10	1	5	1	0	3	copy fasta	OR52N4	chr11	5749243	5760958
OR52N4_chr11_5749243_5760958	0/0	c0007	966	10	8	2	0	0	0	copy fasta	OR52N4	chr11	5749243	5760958
OR52N4_chr11_5749243_5760958	0/0	c0008	966	1	0	0	1	0	0	copy fasta	OR52N4	chr11	5749243	5760958
OR52N4_chr11_5749243_5760958	0/0	c0009	966	1	1	0	0	0	0	copy fasta	OR52N4	chr11	5749243	5760958
OR52N4_chr11_5749243_5760958	0/0	c0010	966	1	0	1	0	0	0	copy fasta	OR52N4	chr11	5749243	5760958
OR52N5_chr11_5771165_5788355	1/1	c0001	975	268	71	58	94	14	29	copy fasta	OR52N5	chr11	5771165	5788355
OR52N5_chr11_5771165_5788355	0/0	c0002	975	61	4	12	35	2	8	copy fasta	OR52N5	chr11	5771165	5788355
OR52N5_chr11_5771165_5788355	0/0	c0003	975	4	4	0	0	0	0	copy fasta	OR52N5	chr11	5771165	5788355
OR52N5_chr11_5771165_5788355	0/0	c0004	975	2	0	0	2	0	0	copy fasta	OR52N5	chr11	5771165	5788355
OR52N5_chr11_5771165_5788355	0/0	c0005	975	1	1	0	0	0	0	copy fasta	OR52N5	chr11	5771165	5788355
OR52N5_chr11_5771165_5788355	0/0	c0006	975	1	0	0	0	0	1	copy fasta	OR52N5	chr11	5771165	5788355
OR52N5_chr11_5771165_5788355	0/0	c0007	975	1	0	0	1	0	0	copy fasta	OR52N5	chr11	5771165	5788355
OR52R1_chr11_4798433_4809380	1/1	c0001	948	305	44	54	159	10	36	copy fasta	OR52R1	chr11	4798433	4809380
OR52R1_chr11_4798433_4809380	0/0	c0002	948	79	42	22	5	5	5	copy fasta	OR52R1	chr11	4798433	4809380
OR52R1_chr11_4798433_4809380	0/0	c0003	948	8	1	4	0	1	2	copy fasta	OR52R1	chr11	4798433	4809380
OR52R1_chr11_4798433_4809380	0/0	c0004	948	5	5	0	0	0	0	copy fasta	OR52R1	chr11	4798433	4809380
OR52R1_chr11_4798433_4809380	0/0	c0005	948	4	0	0	4	0	0	copy fasta	OR52R1	chr11	4798433	4809380
OR52R1_chr11_4798433_4809380	0/0	c0006	948	3	3	0	0	0	0	copy fasta	OR52R1	chr11	4798433	4809380
OR52R1_chr11_4798433_4809380	0/0	c0007	948	1	0	1	0	0	0	copy fasta	OR52R1	chr11	4798433	4809380
OR52R1_chr11_4798433_4809380	0/0	c0008	948	1	1	0	0	0	0	copy fasta	OR52R1	chr11	4798433	4809380
OR52R1_chr11_4798433_4809380	0/0	c0009	948	1	1	0	0	0	0	copy fasta	OR52R1	chr11	4798433	4809380
OR52R1_chr11_4798433_4809380	0/0	c0010	948	1	0	0	1	0	0	copy fasta	OR52R1	chr11	4798433	4809380
OR52R1_chr11_4798433_4809380	0/0	c0011	948	1	0	1	0	0	0	copy fasta	OR52R1	chr11	4798433	4809380
OR52R1_chr11_4798433_4809380	0/0	c0012	948	1	0	0	1	0	0	copy fasta	OR52R1	chr11	4798433	4809380
OR52R1_chr11_4798433_4809380	0/0	c0013	948	1	1	0	0	0	0	copy fasta	OR52R1	chr11	4798433	4809380
OR52R1_chr11_4798433_4809380	0/0	c0014	948	1	0	0	0	0	1	copy fasta	OR52R1	chr11	4798433	4809380
OR52W1_chr11_6194224_6205186	0/1	c0001	963	267	24	49	155	11	27	copy fasta	OR52W1	chr11	6194224	6205186
OR52W1_chr11_6194224_6205186	1/0	c0002	963	77	47	13	3	4	9	copy fasta	OR52W1	chr11	6194224	6205186
OR52W1_chr11_6194224_6205186	0/0	c0003	963	63	0	8	44	1	10	copy fasta	OR52W1	chr11	6194224	6205186
OR52W1_chr11_6194224_6205186	0/0	c0004	963	14	6	4	4	0	0	copy fasta	OR52W1	chr11	6194224	6205186
OR52W1_chr11_6194224_6205186	0/0	c0005	963	7	6	1	0	0	0	copy fasta	OR52W1	chr11	6194224	6205186
OR52W1_chr11_6194224_6205186	0/0	c0006	963	7	0	7	0	0	0	copy fasta	OR52W1	chr11	6194224	6205186
OR52W1_chr11_6194224_6205186	0/0	c0007	963	2	2	0	0	0	0	copy fasta	OR52W1	chr11	6194224	6205186
OR52W1_chr11_6194224_6205186	0/0	c0008	963	1	1	0	0	0	0	copy fasta	OR52W1	chr11	6194224	6205186
OR52W1_chr11_6194224_6205186	0/0	c0009	963	1	1	0	0	0	0	copy fasta	OR52W1	chr11	6194224	6205186
OR52W1_chr11_6194224_6205186	0/0	c0010	963	1	1	0	0	0	0	copy fasta	OR52W1	chr11	6194224	6205186
OR56A1_chr11_6014336_6035758	1/0	c0001	945	307	75	49	142	8	32	copy fasta	OR56A1	chr11	6014336	6035758
OR56A1_chr11_6014336_6035758	0/0	c0002	945	88	21	33	14	8	12	copy fasta	OR56A1	chr11	6014336	6035758
OR56A1_chr11_6014336_6035758	0/0	c0003	945	2	0	0	0	0	2	copy fasta	OR56A1	chr11	6014336	6035758
OR56A1_chr11_6014336_6035758	0/1	c0004	945	1	0	0	0	0	0	copy fasta	OR56A1	chr11	6014336	6035758
OR56A1_chr11_6014336_6035758	0/0	c0005	945	1	0	0	1	0	0	copy fasta	OR56A1	chr11	6014336	6035758
OR56A1_chr11_6014336_6035758	0/0	c0006	945	1	0	1	0	0	0	copy fasta	OR56A1	chr11	6014336	6035758
OR56A1_chr11_6014336_6035758	0/0	c0007	945	1	0	1	0	0	0	copy fasta	OR56A1	chr11	6014336	6035758
OR56A1_chr11_6014336_6035758	0/0	c0008	945	1	0	0	1	0	0	copy fasta	OR56A1	chr11	6014336	6035758
OR56A3_chr11_5937251_5956347	1/0	c0001	948	189	42	27	92	9	18	copy fasta	OR56A3	chr11	5937251	5956347
OR56A3_chr11_5937251_5956347	0/1	c0002	948	172	42	37	72	3	17	copy fasta	OR56A3	chr11	5937251	5956347
OR56A3_chr11_5937251_5956347	0/0	c0003	948	103	4	16	69	6	8	copy fasta	OR56A3	chr11	5937251	5956347