JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
OR56A3_chr11_5937251_5956347	0/0	c0004	948	1	1	0	0	0	0	copy fasta	OR56A3	chr11	5937251	5956347
OR56A3_chr11_5937251_5956347	0/0	c0005	948	1	0	0	0	0	1	copy fasta	OR56A3	chr11	5937251	5956347
OR56A3_chr11_5937251_5956347	0/0	c0006	948	1	0	1	0	0	0	copy fasta	OR56A3	chr11	5937251	5956347
OR56A3_chr11_5937251_5956347	0/0	c0007	948	1	0	0	1	0	0	copy fasta	OR56A3	chr11	5937251	5956347
OR56A3_chr11_5937251_5956347	0/0	c0008	948	1	1	0	0	0	0	copy fasta	OR56A3	chr11	5937251	5956347
OR56A3_chr11_5937251_5956347	0/0	c0009	948	1	0	1	0	0	0	copy fasta	OR56A3	chr11	5937251	5956347
OR56A4_chr11_5994445_6011946	1/1	c0001	942	385	63	65	205	13	37	copy fasta	OR56A4	chr11	5994445	6011946
OR56A4_chr11_5994445_6011946	0/0	c0002	942	52	3	16	18	5	10	copy fasta	OR56A4	chr11	5994445	6011946
OR56A4_chr11_5994445_6011946	0/0	c0003	942	28	27	1	0	0	0	copy fasta	OR56A4	chr11	5994445	6011946
OR56A4_chr11_5994445_6011946	0/0	c0004	942	1	1	0	0	0	0	copy fasta	OR56A4	chr11	5994445	6011946
OR56A4_chr11_5994445_6011946	0/0	c0005	942	1	0	1	0	0	0	copy fasta	OR56A4	chr11	5994445	6011946
OR56A4_chr11_5994445_6011946	0/0	c0006	942	1	0	1	0	0	0	copy fasta	OR56A4	chr11	5994445	6011946
OR56A4_chr11_5994445_6011946	0/0	c0007	942	1	0	0	0	0	1	copy fasta	OR56A4	chr11	5994445	6011946
OR56A4_chr11_5994445_6011946	0/0	c0008	942	1	0	0	1	0	0	copy fasta	OR56A4	chr11	5994445	6011946
OR56A5_chr11_5962553_5973494	1/1	c0001	942	121	20	24	53	2	20	copy fasta	OR56A5	chr11	5962553	5973494
OR56A5_chr11_5962553_5973494	0/0	c0002	942	102	17	18	55	6	6	copy fasta	OR56A5	chr11	5962553	5973494
OR56A5_chr11_5962553_5973494	0/0	c0003	942	101	51	7	38	0	5	copy fasta	OR56A5	chr11	5962553	5973494
OR56A5_chr11_5962553_5973494	0/0	c0004	942	88	1	16	65	3	3	copy fasta	OR56A5	chr11	5962553	5973494
OR56A5_chr11_5962553_5973494	0/0	c0005	942	13	2	2	3	3	3	copy fasta	OR56A5	chr11	5962553	5973494
OR56A5_chr11_5962553_5973494	0/0	c0006	942	4	0	1	0	0	3	copy fasta	OR56A5	chr11	5962553	5973494
OR56A5_chr11_5962553_5973494	0/0	c0007	942	1	0	0	0	1	0	copy fasta	OR56A5	chr11	5962553	5973494
OR56A5_chr11_5962553_5973494	0/0	c0008	942	1	0	0	1	0	0	copy fasta	OR56A5	chr11	5962553	5973494
OR56A5_chr11_5962553_5973494	0/0	c0009	942	1	1	0	0	0	0	copy fasta	OR56A5	chr11	5962553	5973494
OR56A5_chr11_5962553_5973494	0/0	c0010	942	1	0	0	1	0	0	copy fasta	OR56A5	chr11	5962553	5973494
OR56A5_chr11_5962553_5973494	0/0	c0011	942	1	1	0	0	0	0	copy fasta	OR56A5	chr11	5962553	5973494
OR56A5_chr11_5962553_5973494	0/0	c0012	942	1	1	0	0	0	0	copy fasta	OR56A5	chr11	5962553	5973494
OR56A5_chr11_5962553_5973494	0/0	c0013	942	1	0	0	0	1	0	copy fasta	OR56A5	chr11	5962553	5973494
OR56B1_chr11_5731448_5743523	0/1	c0001	975	250	47	47	107	17	31	copy fasta	OR56B1	chr11	5731448	5743523
OR56B1_chr11_5731448_5743523	0/0	c0002	975	55	9	13	25	0	8	copy fasta	OR56B1	chr11	5731448	5743523
OR56B1_chr11_5731448_5743523	0/0	c0003	975	54	7	2	43	0	2	copy fasta	OR56B1	chr11	5731448	5743523
OR56B1_chr11_5731448_5743523	1/0	c0004	975	47	6	5	31	0	4	copy fasta	OR56B1	chr11	5731448	5743523
OR56B1_chr11_5731448_5743523	0/0	c0005	975	14	0	5	9	0	0	copy fasta	OR56B1	chr11	5731448	5743523
OR56B1_chr11_5731448_5743523	0/0	c0006	975	10	10	0	0	0	0	copy fasta	OR56B1	chr11	5731448	5743523
OR56B1_chr11_5731448_5743523	0/0	c0007	975	3	3	0	0	0	0	copy fasta	OR56B1	chr11	5731448	5743523
OR56B1_chr11_5731448_5743523	0/0	c0008	975	3	3	0	0	0	0	copy fasta	OR56B1	chr11	5731448	5743523
OR56B1_chr11_5731448_5743523	0/0	c0009	975	2	1	1	0	0	0	copy fasta	OR56B1	chr11	5731448	5743523
OR56B1_chr11_5731448_5743523	0/0	c0010	975	2	1	1	0	0	0	copy fasta	OR56B1	chr11	5731448	5743523
OR56B1_chr11_5731448_5743523	0/0	c0011	975	2	0	0	0	0	2	copy fasta	OR56B1	chr11	5731448	5743523
OR56B1_chr11_5731448_5743523	0/0	c0012	975	2	2	0	0	0	0	copy fasta	OR56B1	chr11	5731448	5743523
OR56B1_chr11_5731448_5743523	0/0	c0013	975	1	1	0	0	0	0	copy fasta	OR56B1	chr11	5731448	5743523
OR56B1_chr11_5731448_5743523	0/0	c0014	975	1	1	0	0	0	0	copy fasta	OR56B1	chr11	5731448	5743523
OR56B1_chr11_5731448_5743523	0/0	c0015	975	1	0	0	0	1	0	copy fasta	OR56B1	chr11	5731448	5743523
OR56B1_chr11_5731448_5743523	0/0	c0016	975	1	1	0	0	0	0	copy fasta	OR56B1	chr11	5731448	5743523
OR56B1_chr11_5731448_5743523	0/0	c0017	975	1	0	0	1	0	0	copy fasta	OR56B1	chr11	5731448	5743523
OR56B1_chr11_5731448_5743523	0/0	c0018	975	1	0	0	0	0	1	copy fasta	OR56B1	chr11	5731448	5743523
OR56B2P_chr11_5756153_5774080	0/0	c0000	0	59	17	9	24	3	6	copy fasta	OR56B2P	chr11	5756153	5774080
OR56B2P_chr11_5756153_5774080	0/0	c0001	950	200	18	33	115	9	25	copy fasta	OR56B2P	chr11	5756153	5774080
OR56B2P_chr11_5756153_5774080	0/1	c0002	950	102	22	21	44	3	11	copy fasta	OR56B2P	chr11	5756153	5774080
OR56B2P_chr11_5756153_5774080	1/0	c0003	950	54	17	12	23	0	1	copy fasta	OR56B2P	chr11	5756153	5774080
OR56B2P_chr11_5756153_5774080	0/0	c0004	950	17	16	1	0	0	0	copy fasta	OR56B2P	chr11	5756153	5774080