JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
OR56B2P_chr11_5756153_5774080	0/0	c0005	950	1	0	0	0	0	1	copy fasta	OR56B2P	chr11	5756153	5774080
OR56B2P_chr11_5756153_5774080	0/0	c0006	950	1	0	0	0	1	0	copy fasta	OR56B2P	chr11	5756153	5774080
OR56B4_chr11_6102684_6113835	0/1	c0001	960	222	12	41	138	4	26	copy fasta	OR56B4	chr11	6102684	6113835
OR56B4_chr11_6102684_6113835	1/0	c0002	960	93	32	27	15	5	13	copy fasta	OR56B4	chr11	6102684	6113835
OR56B4_chr11_6102684_6113835	0/0	c0003	960	58	41	8	7	1	1	copy fasta	OR56B4	chr11	6102684	6113835
OR56B4_chr11_6102684_6113835	0/0	c0004	960	3	3	0	0	0	0	copy fasta	OR56B4	chr11	6102684	6113835
OR56B4_chr11_6102684_6113835	0/0	c0005	960	3	0	0	3	0	0	copy fasta	OR56B4	chr11	6102684	6113835
OR56B4_chr11_6102684_6113835	0/0	c0006	960	2	2	0	0	0	0	copy fasta	OR56B4	chr11	6102684	6113835
OR56B4_chr11_6102684_6113835	0/0	c0007	960	1	0	0	0	0	1	copy fasta	OR56B4	chr11	6102684	6113835
OR56B4_chr11_6102684_6113835	0/0	c0008	960	1	0	0	1	0	0	copy fasta	OR56B4	chr11	6102684	6113835
OR56B4_chr11_6102684_6113835	0/0	c0009	960	1	0	0	0	0	1	copy fasta	OR56B4	chr11	6102684	6113835
OR5A1_chr11_59431469_59456380	0/1	c0001	948	228	28	41	121	14	23	copy fasta	OR5A1	chr11	59431469	59456380
OR5A1_chr11_59431469_59456380	1/0	c0002	948	82	48	8	23	0	2	copy fasta	OR5A1	chr11	59431469	59456380
OR5A1_chr11_59431469_59456380	0/0	c0003	948	55	5	12	30	2	6	copy fasta	OR5A1	chr11	59431469	59456380
OR5A1_chr11_59431469_59456380	0/0	c0004	948	26	0	11	12	0	3	copy fasta	OR5A1	chr11	59431469	59456380
OR5A1_chr11_59431469_59456380	0/0	c0005	948	6	6	0	0	0	0	copy fasta	OR5A1	chr11	59431469	59456380
OR5A1_chr11_59431469_59456380	0/0	c0006	948	4	1	3	0	0	0	copy fasta	OR5A1	chr11	59431469	59456380
OR5A1_chr11_59431469_59456380	0/0	c0007	948	1	1	0	0	0	0	copy fasta	OR5A1	chr11	59431469	59456380
OR5A1_chr11_59431469_59456380	0/0	c0008	948	1	0	0	0	0	1	copy fasta	OR5A1	chr11	59431469	59456380
OR5A1_chr11_59431469_59456380	0/0	c0009	948	1	0	1	0	0	0	copy fasta	OR5A1	chr11	59431469	59456380
OR5A1_chr11_59431469_59456380	0/0	c0010	948	1	0	0	0	0	1	copy fasta	OR5A1	chr11	59431469	59456380
OR5A1_chr11_59431469_59456380	0/0	c0011	948	1	0	0	1	0	0	copy fasta	OR5A1	chr11	59431469	59456380
OR5A1_chr11_59431469_59456380	0/0	c0012	948	1	0	0	1	0	0	copy fasta	OR5A1	chr11	59431469	59456380
OR5A1_chr11_59431469_59456380	0/0	c0013	948	1	1	0	0	0	0	copy fasta	OR5A1	chr11	59431469	59456380
OR5A2_chr11_59411969_59431413	1/1	c0001	975	336	91	64	139	8	32	copy fasta	OR5A2	chr11	59411969	59431413
OR5A2_chr11_59411969_59431413	0/0	c0002	975	58	5	12	33	2	6	copy fasta	OR5A2	chr11	59411969	59431413
OR5A2_chr11_59411969_59431413	0/0	c0003	975	22	0	3	17	0	2	copy fasta	OR5A2	chr11	59411969	59431413
OR5A2_chr11_59411969_59431413	0/0	c0004	975	1	0	1	0	0	0	copy fasta	OR5A2	chr11	59411969	59431413
OR5A2_chr11_59411969_59431413	0/0	c0005	975	1	0	0	1	0	0	copy fasta	OR5A2	chr11	59411969	59431413
OR5A2_chr11_59411969_59431413	0/0	c0006	975	1	0	1	0	0	0	copy fasta	OR5A2	chr11	59411969	59431413
OR5A2_chr11_59411969_59431413	0/0	c0007	975	1	0	1	0	0	0	copy fasta	OR5A2	chr11	59411969	59431413
OR5AC2_chr3_98082173_98093102	0/0	c0001	930	206	47	28	105	4	22	copy fasta	OR5AC2	chr3	98082173	98093102
OR5AC2_chr3_98082173_98093102	1/1	c0002	930	161	19	30	86	8	16	copy fasta	OR5AC2	chr3	98082173	98093102
OR5AC2_chr3_98082173_98093102	0/0	c0003	930	12	1	5	0	3	3	copy fasta	OR5AC2	chr3	98082173	98093102
OR5AC2_chr3_98082173_98093102	0/0	c0004	930	12	1	6	0	3	2	copy fasta	OR5AC2	chr3	98082173	98093102
OR5AC2_chr3_98082173_98093102	0/0	c0005	930	11	0	0	11	0	0	copy fasta	OR5AC2	chr3	98082173	98093102
OR5AC2_chr3_98082173_98093102	0/0	c0006	930	10	0	4	6	0	0	copy fasta	OR5AC2	chr3	98082173	98093102
OR5AC2_chr3_98082173_98093102	0/0	c0007	930	7	0	2	4	0	1	copy fasta	OR5AC2	chr3	98082173	98093102
OR5AC2_chr3_98082173_98093102	0/0	c0008	930	7	5	2	0	0	0	copy fasta	OR5AC2	chr3	98082173	98093102
OR5AC2_chr3_98082173_98093102	0/0	c0009	930	6	4	0	1	0	1	copy fasta	OR5AC2	chr3	98082173	98093102
OR5AC2_chr3_98082173_98093102	0/0	c0010	931	6	6	0	0	0	0	copy fasta	OR5AC2	chr3	98082173	98093102
OR5AC2_chr3_98082173_98093102	0/0	c0011	930	5	4	1	0	0	0	copy fasta	OR5AC2	chr3	98082173	98093102
OR5AC2_chr3_98082173_98093102	0/0	c0012	931	4	4	0	0	0	0	copy fasta	OR5AC2	chr3	98082173	98093102
OR5AC2_chr3_98082173_98093102	0/0	c0013	930	4	2	0	2	0	0	copy fasta	OR5AC2	chr3	98082173	98093102
OR5AC2_chr3_98082173_98093102	0/0	c0014	930	2	1	0	1	0	0	copy fasta	OR5AC2	chr3	98082173	98093102
OR5AC2_chr3_98082173_98093102	0/0	c0015	931	2	2	0	0	0	0	copy fasta	OR5AC2	chr3	98082173	98093102
OR5AC2_chr3_98082173_98093102	0/0	c0016	930	1	1	0	0	0	0	copy fasta	OR5AC2	chr3	98082173	98093102
OR5AC2_chr3_98082173_98093102	0/0	c0017	930	1	0	0	0	0	1	copy fasta	OR5AC2	chr3	98082173	98093102
OR5AC2_chr3_98082173_98093102	0/0	c0018	930	1	0	0	1	0	0	copy fasta	OR5AC2	chr3	98082173	98093102
OR5AC2_chr3_98082173_98093102	0/0	c0019	930	1	0	0	1	0	0	copy fasta	OR5AC2	chr3	98082173	98093102