JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
OR5AC2_chr3_98082173_98093102	0/0	c0020	930	1	0	0	1	0	0	copy fasta	OR5AC2	chr3	98082173	98093102
OR5AC2_chr3_98082173_98093102	0/0	c0021	930	1	1	0	0	0	0	copy fasta	OR5AC2	chr3	98082173	98093102
OR5AC2_chr3_98082173_98093102	0/0	c0022	930	1	0	0	1	0	0	copy fasta	OR5AC2	chr3	98082173	98093102
OR5AK2_chr11_56983914_56994843	0/0	c0001	930	141	62	23	44	6	6	copy fasta	OR5AK2	chr11	56983914	56994843
OR5AK2_chr11_56983914_56994843	1/0	c0002	930	111	4	34	55	4	13	copy fasta	OR5AK2	chr11	56983914	56994843
OR5AK2_chr11_56983914_56994843	0/0	c0003	930	96	0	6	79	4	7	copy fasta	OR5AK2	chr11	56983914	56994843
OR5AK2_chr11_56983914_56994843	0/0	c0004	930	74	11	13	35	3	12	copy fasta	OR5AK2	chr11	56983914	56994843
OR5AK2_chr11_56983914_56994843	0/1	c0005	930	17	3	8	0	1	4	copy fasta	OR5AK2	chr11	56983914	56994843
OR5AK2_chr11_56983914_56994843	0/0	c0006	930	4	4	0	0	0	0	copy fasta	OR5AK2	chr11	56983914	56994843
OR5AK2_chr11_56983914_56994843	0/0	c0007	930	3	3	0	0	0	0	copy fasta	OR5AK2	chr11	56983914	56994843
OR5AK2_chr11_56983914_56994843	0/0	c0008	930	3	0	0	0	0	3	copy fasta	OR5AK2	chr11	56983914	56994843
OR5AK2_chr11_56983914_56994843	0/0	c0009	930	1	0	0	1	0	0	copy fasta	OR5AK2	chr11	56983914	56994843
OR5AK2_chr11_56983914_56994843	0/0	c0010	930	1	1	0	0	0	0	copy fasta	OR5AK2	chr11	56983914	56994843
OR5AK2_chr11_56983914_56994843	0/0	c0011	930	1	1	0	0	0	0	copy fasta	OR5AK2	chr11	56983914	56994843
OR5AK2_chr11_56983914_56994843	0/0	c0012	930	1	1	0	0	0	0	copy fasta	OR5AK2	chr11	56983914	56994843
OR5AK2_chr11_56983914_56994843	0/0	c0013	930	1	0	0	1	0	0	copy fasta	OR5AK2	chr11	56983914	56994843
OR5AK2_chr11_56983914_56994843	0/0	c0014	930	1	0	0	1	0	0	copy fasta	OR5AK2	chr11	56983914	56994843
OR5AK2_chr11_56983914_56994843	0/0	c0015	930	1	0	0	0	0	1	copy fasta	OR5AK2	chr11	56983914	56994843
OR5AN1_chr11_59353895_59376714	0/1	c0001	936	193	33	50	74	8	27	copy fasta	OR5AN1	chr11	59353895	59376714
OR5AN1_chr11_59353895_59376714	1/0	c0002	936	150	45	19	73	2	10	copy fasta	OR5AN1	chr11	59353895	59376714
OR5AN1_chr11_59353895_59376714	0/0	c0003	936	4	3	1	0	0	0	copy fasta	OR5AN1	chr11	59353895	59376714
OR5AN1_chr11_59353895_59376714	0/0	c0004	936	2	2	0	0	0	0	copy fasta	OR5AN1	chr11	59353895	59376714
OR5AN1_chr11_59353895_59376714	0/0	c0005	936	2	2	0	0	0	0	copy fasta	OR5AN1	chr11	59353895	59376714
OR5AN1_chr11_59353895_59376714	0/0	c0006	936	2	0	0	2	0	0	copy fasta	OR5AN1	chr11	59353895	59376714
OR5AN1_chr11_59353895_59376714	0/0	c0007	936	1	1	0	0	0	0	copy fasta	OR5AN1	chr11	59353895	59376714
OR5AN1_chr11_59353895_59376714	0/0	c0008	936	1	0	0	0	0	1	copy fasta	OR5AN1	chr11	59353895	59376714
OR5AN1_chr11_59353895_59376714	0/0	c0009	936	1	1	0	0	0	0	copy fasta	OR5AN1	chr11	59353895	59376714
OR5AN1_chr11_59353895_59376714	0/0	c0010	936	1	0	0	1	0	0	copy fasta	OR5AN1	chr11	59353895	59376714
OR5AN1_chr11_59353895_59376714	0/0	c0011	936	1	1	0	0	0	0	copy fasta	OR5AN1	chr11	59353895	59376714
OR5AP2_chr11_56636489_56647439	1/1	c0001	951	380	70	62	196	13	37	copy fasta	OR5AP2	chr11	56636489	56647439
OR5AP2_chr11_56636489_56647439	0/0	c0002	951	34	21	10	0	2	1	copy fasta	OR5AP2	chr11	56636489	56647439
OR5AP2_chr11_56636489_56647439	0/0	c0003	951	9	1	6	0	1	1	copy fasta	OR5AP2	chr11	56636489	56647439
OR5AP2_chr11_56636489_56647439	0/0	c0004	951	4	0	4	0	0	0	copy fasta	OR5AP2	chr11	56636489	56647439
OR5AP2_chr11_56636489_56647439	0/0	c0005	951	2	1	1	0	0	0	copy fasta	OR5AP2	chr11	56636489	56647439
OR5AP2_chr11_56636489_56647439	0/0	c0006	951	2	0	0	2	0	0	copy fasta	OR5AP2	chr11	56636489	56647439
OR5AP2_chr11_56636489_56647439	0/0	c0007	951	1	0	0	1	0	0	copy fasta	OR5AP2	chr11	56636489	56647439
OR5AP2_chr11_56636489_56647439	0/0	c0008	951	1	0	0	1	0	0	copy fasta	OR5AP2	chr11	56636489	56647439
OR5AP2_chr11_56636489_56647439	0/0	c0009	951	1	0	1	0	0	0	copy fasta	OR5AP2	chr11	56636489	56647439
OR5AP2_chr11_56636489_56647439	0/0	c0010	951	1	1	0	0	0	0	copy fasta	OR5AP2	chr11	56636489	56647439
OR5AP2_chr11_56636489_56647439	0/0	c0011	951	1	0	0	0	0	1	copy fasta	OR5AP2	chr11	56636489	56647439
OR5AP2_chr11_56636489_56647439	0/0	c0012	951	1	1	0	0	0	0	copy fasta	OR5AP2	chr11	56636489	56647439
OR5AP2_chr11_56636489_56647439	0/0	c0013	951	1	1	0	0	0	0	copy fasta	OR5AP2	chr11	56636489	56647439
OR5AR1_chr11_56658686_56669618	0/0	c0001	933	272	39	52	135	16	30	copy fasta	OR5AR1	chr11	56658686	56669618
OR5AR1_chr11_56658686_56669618	1/1	c0002	933	101	56	11	23	2	7	copy fasta	OR5AR1	chr11	56658686	56669618
OR5AR1_chr11_56658686_56669618	0/0	c0003	933	25	0	0	23	0	2	copy fasta	OR5AR1	chr11	56658686	56669618
OR5AR1_chr11_56658686_56669618	0/0	c0004	933	22	1	1	15	0	5	copy fasta	OR5AR1	chr11	56658686	56669618
OR5AR1_chr11_56658686_56669618	0/0	c0005	933	4	0	0	4	0	0	copy fasta	OR5AR1	chr11	56658686	56669618
OR5AR1_chr11_56658686_56669618	0/0	c0006	933	3	1	2	0	0	0	copy fasta	OR5AR1	chr11	56658686	56669618
OR5AR1_chr11_56658686_56669618	0/0	c0007	933	2	1	1	0	0	0	copy fasta	OR5AR1	chr11	56658686	56669618
OR5AR1_chr11_56658686_56669618	0/0	c0008	933	1	0	1	0	0	0	copy fasta	OR5AR1	chr11	56658686	56669618