JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
OR5AR1_chr11_56658686_56669618	0/0	c0009	933	1	0	1	0	0	0	copy fasta	OR5AR1	chr11	56658686	56669618
OR5AR1_chr11_56658686_56669618	0/0	c0010	933	1	0	1	0	0	0	copy fasta	OR5AR1	chr11	56658686	56669618
OR5AS1_chr11_56022654_56043191	0/0	c0001	975	363	73	66	174	16	34	copy fasta	OR5AS1	chr11	56022654	56043191
OR5AS1_chr11_56022654_56043191	0/1	c0002	975	41	6	4	25	0	5	copy fasta	OR5AS1	chr11	56022654	56043191
OR5AS1_chr11_56022654_56043191	1/0	c0003	975	8	6	1	0	0	0	copy fasta	OR5AS1	chr11	56022654	56043191
OR5AS1_chr11_56022654_56043191	0/0	c0004	975	5	1	2	0	2	0	copy fasta	OR5AS1	chr11	56022654	56043191
OR5AS1_chr11_56022654_56043191	0/0	c0005	975	3	3	0	0	0	0	copy fasta	OR5AS1	chr11	56022654	56043191
OR5AS1_chr11_56022654_56043191	0/0	c0006	975	3	3	0	0	0	0	copy fasta	OR5AS1	chr11	56022654	56043191
OR5AS1_chr11_56022654_56043191	0/0	c0007	975	2	0	0	2	0	0	copy fasta	OR5AS1	chr11	56022654	56043191
OR5AS1_chr11_56022654_56043191	0/0	c0008	975	1	0	0	0	0	1	copy fasta	OR5AS1	chr11	56022654	56043191
OR5AS1_chr11_56022654_56043191	0/0	c0009	975	1	1	0	0	0	0	copy fasta	OR5AS1	chr11	56022654	56043191
OR5AS1_chr11_56022654_56043191	0/0	c0010	975	1	0	0	1	0	0	copy fasta	OR5AS1	chr11	56022654	56043191
OR5AS1_chr11_56022654_56043191	0/0	c0011	975	1	0	0	1	0	0	copy fasta	OR5AS1	chr11	56022654	56043191
OR5AS1_chr11_56022654_56043191	0/0	c0012	975	1	0	1	0	0	0	copy fasta	OR5AS1	chr11	56022654	56043191
OR5AS1_chr11_56022654_56043191	0/0	c0013	975	1	0	0	1	0	0	copy fasta	OR5AS1	chr11	56022654	56043191
OR5AS1_chr11_56022654_56043191	0/0	c0014	975	1	1	0	0	0	0	copy fasta	OR5AS1	chr11	56022654	56043191
OR5AU1_chr14_21149865_21161063	0/0	c0001	936	125	16	17	78	0	14	copy fasta	OR5AU1	chr14	21149865	21161063
OR5AU1_chr14_21149865_21161063	0/1	c0002	936	81	9	21	22	11	17	copy fasta	OR5AU1	chr14	21149865	21161063
OR5AU1_chr14_21149865_21161063	0/0	c0003	936	61	9	9	40	0	3	copy fasta	OR5AU1	chr14	21149865	21161063
OR5AU1_chr14_21149865_21161063	1/0	c0004	936	56	0	15	30	4	6	copy fasta	OR5AU1	chr14	21149865	21161063
OR5AU1_chr14_21149865_21161063	0/0	c0005	936	26	4	2	19	0	1	copy fasta	OR5AU1	chr14	21149865	21161063
OR5AU1_chr14_21149865_21161063	0/0	c0006	936	22	11	5	4	1	1	copy fasta	OR5AU1	chr14	21149865	21161063
OR5AU1_chr14_21149865_21161063	0/0	c0007	936	21	5	0	11	2	3	copy fasta	OR5AU1	chr14	21149865	21161063
OR5AU1_chr14_21149865_21161063	0/0	c0008	936	14	4	2	8	0	0	copy fasta	OR5AU1	chr14	21149865	21161063
OR5AU1_chr14_21149865_21161063	0/0	c0009	936	9	9	0	0	0	0	copy fasta	OR5AU1	chr14	21149865	21161063
OR5AU1_chr14_21149865_21161063	0/0	c0010	936	8	8	0	0	0	0	copy fasta	OR5AU1	chr14	21149865	21161063
OR5AU1_chr14_21149865_21161063	0/0	c0011	936	7	1	2	3	0	1	copy fasta	OR5AU1	chr14	21149865	21161063
OR5AU1_chr14_21149865_21161063	0/0	c0012	936	7	0	3	4	0	0	copy fasta	OR5AU1	chr14	21149865	21161063
OR5AU1_chr14_21149865_21161063	0/0	c0013	933	6	5	1	0	0	0	copy fasta	OR5AU1	chr14	21149865	21161063
OR5AU1_chr14_21149865_21161063	0/0	c0014	936	5	5	0	0	0	0	copy fasta	OR5AU1	chr14	21149865	21161063
OR5AU1_chr14_21149865_21161063	0/0	c0015	936	3	3	0	0	0	0	copy fasta	OR5AU1	chr14	21149865	21161063
OR5AU1_chr14_21149865_21161063	0/0	c0016	936	2	2	0	0	0	0	copy fasta	OR5AU1	chr14	21149865	21161063
OR5AU1_chr14_21149865_21161063	0/0	c0017	936	2	0	1	1	0	0	copy fasta	OR5AU1	chr14	21149865	21161063
OR5AU1_chr14_21149865_21161063	0/0	c0018	936	2	2	0	0	0	0	copy fasta	OR5AU1	chr14	21149865	21161063
OR5AU1_chr14_21149865_21161063	0/0	c0019	936	1	1	0	0	0	0	copy fasta	OR5AU1	chr14	21149865	21161063
OR5AU1_chr14_21149865_21161063	0/0	c0020	936	1	0	0	1	0	0	copy fasta	OR5AU1	chr14	21149865	21161063
OR5AU1_chr14_21149865_21161063	0/0	c0021	936	1	0	0	1	0	0	copy fasta	OR5AU1	chr14	21149865	21161063
OR5AU1_chr14_21149865_21161063	0/0	c0022	936	1	0	0	1	0	0	copy fasta	OR5AU1	chr14	21149865	21161063
OR5AU1_chr14_21149865_21161063	0/0	c0023	936	1	0	0	1	0	0	copy fasta	OR5AU1	chr14	21149865	21161063
OR5AU1_chr14_21149865_21161063	0/0	c0024	936	1	0	0	1	0	0	copy fasta	OR5AU1	chr14	21149865	21161063
OR5AU1_chr14_21149865_21161063	0/0	c0025	936	1	0	0	1	0	0	copy fasta	OR5AU1	chr14	21149865	21161063
OR5AU1_chr14_21149865_21161063	0/0	c0026	936	1	0	1	0	0	0	copy fasta	OR5AU1	chr14	21149865	21161063
OR5AU1_chr14_21149865_21161063	0/0	c0027	936	1	0	1	0	0	0	copy fasta	OR5AU1	chr14	21149865	21161063
OR5AU1_chr14_21149865_21161063	0/0	c0028	936	1	0	0	1	0	0	copy fasta	OR5AU1	chr14	21149865	21161063
OR5AU1_chr14_21149865_21161063	0/0	c0029	936	1	0	0	1	0	0	copy fasta	OR5AU1	chr14	21149865	21161063
OR5AU1_chr14_21149865_21161063	0/0	c0030	936	1	1	0	0	0	0	copy fasta	OR5AU1	chr14	21149865	21161063
OR5AU1_chr14_21149865_21161063	0/0	c0031	936	1	1	0	0	0	0	copy fasta	OR5AU1	chr14	21149865	21161063
OR5B12_chr11_58433994_58447236	0/0	c0001	945	301	68	51	141	12	29	copy fasta	OR5B12	chr11	58433994	58447236
OR5B12_chr11_58433994_58447236	0/1	c0002	945	103	22	19	46	3	12	copy fasta	OR5B12	chr11	58433994	58447236
OR5B12_chr11_58433994_58447236	0/0	c0003	945	2	0	2	0	0	0	copy fasta	OR5B12	chr11	58433994	58447236