JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
OR5B12_chr11_58433994_58447236	0/0	c0004	945	2	0	1	0	1	0	copy fasta	OR5B12	chr11	58433994	58447236
OR5B12_chr11_58433994_58447236	0/0	c0005	945	1	0	0	1	0	0	copy fasta	OR5B12	chr11	58433994	58447236
OR5B12_chr11_58433994_58447236	0/0	c0006	945	1	1	0	0	0	0	copy fasta	OR5B12	chr11	58433994	58447236
OR5B12_chr11_58433994_58447236	0/0	c0007	945	1	0	0	1	0	0	copy fasta	OR5B12	chr11	58433994	58447236
OR5B12_chr11_58433994_58447236	0/0	c0008	945	1	0	0	1	0	0	copy fasta	OR5B12	chr11	58433994	58447236
OR5B12_chr11_58433994_58447236	0/0	c0009	945	1	0	0	0	0	1	copy fasta	OR5B12	chr11	58433994	58447236
OR5B12_chr11_58433994_58447236	1/0	c0010	945	1	0	0	0	0	0	copy fasta	OR5B12	chr11	58433994	58447236
OR5B12_chr11_58433994_58447236	0/0	c0011	945	1	0	1	0	0	0	copy fasta	OR5B12	chr11	58433994	58447236
OR5B12_chr11_58433994_58447236	0/0	c0012	945	1	1	0	0	0	0	copy fasta	OR5B12	chr11	58433994	58447236
OR5B17_chr11_58353124_58364069	0/0	c0001	945	215	32	42	108	11	22	copy fasta	OR5B17	chr11	58353124	58364069
OR5B17_chr11_58353124_58364069	1/1	c0002	945	106	23	22	43	4	12	copy fasta	OR5B17	chr11	58353124	58364069
OR5B17_chr11_58353124_58364069	0/0	c0003	945	21	16	0	4	1	0	copy fasta	OR5B17	chr11	58353124	58364069
OR5B17_chr11_58353124_58364069	0/0	c0004	945	14	0	0	14	0	0	copy fasta	OR5B17	chr11	58353124	58364069
OR5B17_chr11_58353124_58364069	0/0	c0005	945	10	8	2	0	0	0	copy fasta	OR5B17	chr11	58353124	58364069
OR5B17_chr11_58353124_58364069	0/0	c0006	945	7	7	0	0	0	0	copy fasta	OR5B17	chr11	58353124	58364069
OR5B17_chr11_58353124_58364069	0/0	c0007	945	5	0	0	5	0	0	copy fasta	OR5B17	chr11	58353124	58364069
OR5B17_chr11_58353124_58364069	0/0	c0008	945	2	2	0	0	0	0	copy fasta	OR5B17	chr11	58353124	58364069
OR5B21_chr11_58501807_58513105	1/1	c0001	930	357	72	65	176	12	30	copy fasta	OR5B21	chr11	58501807	58513105
OR5B21_chr11_58501807_58513105	0/0	c0002	930	7	7	0	0	0	0	copy fasta	OR5B21	chr11	58501807	58513105
OR5B21_chr11_58501807_58513105	0/0	c0003	930	7	6	1	0	0	0	copy fasta	OR5B21	chr11	58501807	58513105
OR5B21_chr11_58501807_58513105	0/0	c0004	930	1	1	0	0	0	0	copy fasta	OR5B21	chr11	58501807	58513105
OR5B21_chr11_58501807_58513105	0/0	c0005	930	1	0	0	1	0	0	copy fasta	OR5B21	chr11	58501807	58513105
OR5B21_chr11_58501807_58513105	0/0	c0006	930	1	0	0	1	0	0	copy fasta	OR5B21	chr11	58501807	58513105
OR5B2_chr11_58416238_58433121	1/0	c0001	930	178	18	27	103	9	20	copy fasta	OR5B2	chr11	58416238	58433121
OR5B2_chr11_58416238_58433121	0/1	c0002	930	88	18	17	43	2	7	copy fasta	OR5B2	chr11	58416238	58433121
OR5B2_chr11_58416238_58433121	0/0	c0003	930	81	34	18	21	3	5	copy fasta	OR5B2	chr11	58416238	58433121
OR5B2_chr11_58416238_58433121	0/0	c0004	930	8	6	2	0	0	0	copy fasta	OR5B2	chr11	58416238	58433121
OR5B2_chr11_58416238_58433121	0/0	c0005	930	8	8	0	0	0	0	copy fasta	OR5B2	chr11	58416238	58433121
OR5B2_chr11_58416238_58433121	0/0	c0006	930	7	0	0	7	0	0	copy fasta	OR5B2	chr11	58416238	58433121
OR5B2_chr11_58416238_58433121	0/0	c0007	930	3	3	0	0	0	0	copy fasta	OR5B2	chr11	58416238	58433121
OR5B2_chr11_58416238_58433121	0/0	c0008	930	2	0	2	0	0	0	copy fasta	OR5B2	chr11	58416238	58433121
OR5B2_chr11_58416238_58433121	0/0	c0009	930	1	1	0	0	0	0	copy fasta	OR5B2	chr11	58416238	58433121
OR5B2_chr11_58416238_58433121	0/0	c0010	930	1	1	0	0	0	0	copy fasta	OR5B2	chr11	58416238	58433121
OR5B2_chr11_58416238_58433121	0/0	c0011	930	1	1	0	0	0	0	copy fasta	OR5B2	chr11	58416238	58433121
OR5B2_chr11_58416238_58433121	0/0	c0012	930	1	1	0	0	0	0	copy fasta	OR5B2	chr11	58416238	58433121
OR5B2_chr11_58416238_58433121	0/0	c0013	930	1	1	0	0	0	0	copy fasta	OR5B2	chr11	58416238	58433121
OR5B2_chr11_58416238_58433121	0/0	c0014	930	1	0	0	1	0	0	copy fasta	OR5B2	chr11	58416238	58433121
OR5B2_chr11_58416238_58433121	0/0	c0015	930	1	0	0	1	0	0	copy fasta	OR5B2	chr11	58416238	58433121
OR5B3_chr11_58397464_58411874	1/0	c0001	945	227	61	27	100	14	24	copy fasta	OR5B3	chr11	58397464	58411874
OR5B3_chr11_58397464_58411874	0/1	c0002	945	99	15	21	46	4	12	copy fasta	OR5B3	chr11	58397464	58411874
OR5B3_chr11_58397464_58411874	0/0	c0003	945	27	0	9	18	0	0	copy fasta	OR5B3	chr11	58397464	58411874
OR5B3_chr11_58397464_58411874	0/0	c0004	945	12	10	2	0	0	0	copy fasta	OR5B3	chr11	58397464	58411874
OR5B3_chr11_58397464_58411874	0/0	c0005	945	8	8	0	0	0	0	copy fasta	OR5B3	chr11	58397464	58411874
OR5B3_chr11_58397464_58411874	0/0	c0006	945	3	1	2	0	0	0	copy fasta	OR5B3	chr11	58397464	58411874
OR5B3_chr11_58397464_58411874	0/0	c0007	945	2	0	2	0	0	0	copy fasta	OR5B3	chr11	58397464	58411874
OR5B3_chr11_58397464_58411874	0/0	c0008	945	2	0	0	2	0	0	copy fasta	OR5B3	chr11	58397464	58411874
OR5B3_chr11_58397464_58411874	0/0	c0009	945	1	0	0	1	0	0	copy fasta	OR5B3	chr11	58397464	58411874
OR5B3_chr11_58397464_58411874	0/0	c0010	945	1	1	0	0	0	0	copy fasta	OR5B3	chr11	58397464	58411874
OR5B3_chr11_58397464_58411874	0/0	c0011	945	1	0	0	1	0	0	copy fasta	OR5B3	chr11	58397464	58411874
OR5B3_chr11_58397464_58411874	0/0	c0012	945	1	1	0	0	0	0	copy fasta	OR5B3	chr11	58397464	58411874