JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
OR5B3_chr11_58397464_58411874	0/0	c0013	945	1	0	1	0	0	0	copy fasta	OR5B3	chr11	58397464	58411874
OR5B3_chr11_58397464_58411874	0/0	c0014	945	1	1	0	0	0	0	copy fasta	OR5B3	chr11	58397464	58411874
OR5BS1P_chr12_48554882_48567956	1/0	c0001	936	198	59	30	84	5	19	copy fasta	OR5BS1P	chr12	48554882	48567956
OR5BS1P_chr12_48554882_48567956	0/0	c0002	936	132	30	16	75	2	9	copy fasta	OR5BS1P	chr12	48554882	48567956
OR5BS1P_chr12_48554882_48567956	0/1	c0003	936	100	3	29	47	4	16	copy fasta	OR5BS1P	chr12	48554882	48567956
OR5BS1P_chr12_48554882_48567956	0/0	c0004	936	18	1	6	6	3	2	copy fasta	OR5BS1P	chr12	48554882	48567956
OR5BS1P_chr12_48554882_48567956	0/0	c0005	936	5	4	1	0	0	0	copy fasta	OR5BS1P	chr12	48554882	48567956
OR5BS1P_chr12_48554882_48567956	0/0	c0006	936	3	0	0	3	0	0	copy fasta	OR5BS1P	chr12	48554882	48567956
OR5BS1P_chr12_48554882_48567956	0/0	c0007	936	1	0	0	1	0	0	copy fasta	OR5BS1P	chr12	48554882	48567956
OR5BS1P_chr12_48554882_48567956	0/0	c0008	936	1	1	0	0	0	0	copy fasta	OR5BS1P	chr12	48554882	48567956
OR5C1_chr9_122783933_122794895	1/1	c0001	963	419	81	66	207	18	45	copy fasta	OR5C1	chr9	122783933	122794895
OR5C1_chr9_122783933_122794895	0/0	c0002	963	8	7	1	0	0	0	copy fasta	OR5C1	chr9	122783933	122794895
OR5C1_chr9_122783933_122794895	0/0	c0003	963	4	4	0	0	0	0	copy fasta	OR5C1	chr9	122783933	122794895
OR5C1_chr9_122783933_122794895	0/0	c0004	963	3	1	2	0	0	0	copy fasta	OR5C1	chr9	122783933	122794895
OR5C1_chr9_122783933_122794895	0/0	c0005	963	2	0	0	2	0	0	copy fasta	OR5C1	chr9	122783933	122794895
OR5C1_chr9_122783933_122794895	0/0	c0006	963	2	2	0	0	0	0	copy fasta	OR5C1	chr9	122783933	122794895
OR5C1_chr9_122783933_122794895	0/0	c0007	963	2	1	1	0	0	0	copy fasta	OR5C1	chr9	122783933	122794895
OR5C1_chr9_122783933_122794895	0/0	c0008	963	1	0	0	0	0	1	copy fasta	OR5C1	chr9	122783933	122794895
OR5C1_chr9_122783933_122794895	0/0	c0009	963	1	0	0	1	0	0	copy fasta	OR5C1	chr9	122783933	122794895
OR5D13_chr11_55768438_55779382	0/0	c0001	945	349	76	63	160	15	35	copy fasta	OR5D13	chr11	55768438	55779382
OR5D13_chr11_55768438_55779382	0/1	c0002	945	39	6	5	24	0	3	copy fasta	OR5D13	chr11	55768438	55779382
OR5D13_chr11_55768438_55779382	0/0	c0003	945	11	0	0	11	0	0	copy fasta	OR5D13	chr11	55768438	55779382
OR5D13_chr11_55768438_55779382	0/0	c0004	945	8	0	0	8	0	0	copy fasta	OR5D13	chr11	55768438	55779382
OR5D13_chr11_55768438_55779382	1/0	c0005	945	8	6	1	0	0	0	copy fasta	OR5D13	chr11	55768438	55779382
OR5D13_chr11_55768438_55779382	0/0	c0006	945	4	1	1	0	2	0	copy fasta	OR5D13	chr11	55768438	55779382
OR5D13_chr11_55768438_55779382	0/0	c0007	945	3	3	0	0	0	0	copy fasta	OR5D13	chr11	55768438	55779382
OR5D13_chr11_55768438_55779382	0/0	c0008	945	2	2	0	0	0	0	copy fasta	OR5D13	chr11	55768438	55779382
OR5D13_chr11_55768438_55779382	0/0	c0009	945	2	0	0	2	0	0	copy fasta	OR5D13	chr11	55768438	55779382
OR5D13_chr11_55768438_55779382	0/0	c0010	945	1	0	0	0	0	1	copy fasta	OR5D13	chr11	55768438	55779382
OR5D13_chr11_55768438_55779382	0/0	c0011	945	1	0	0	0	1	0	copy fasta	OR5D13	chr11	55768438	55779382
OR5D13_chr11_55768438_55779382	0/0	c0012	945	1	0	0	0	0	1	copy fasta	OR5D13	chr11	55768438	55779382
OR5D13_chr11_55768438_55779382	0/0	c0013	945	1	1	0	0	0	0	copy fasta	OR5D13	chr11	55768438	55779382
OR5D13_chr11_55768438_55779382	0/0	c0014	945	1	0	0	1	0	0	copy fasta	OR5D13	chr11	55768438	55779382
OR5D13_chr11_55768438_55779382	0/0	c0015	945	1	1	0	0	0	0	copy fasta	OR5D13	chr11	55768438	55779382
OR5D14_chr11_55790556_55801500	0/0	c0001	945	223	34	46	116	4	23	copy fasta	OR5D14	chr11	55790556	55801500
OR5D14_chr11_55790556_55801500	0/0	c0002	945	102	13	8	63	5	13	copy fasta	OR5D14	chr11	55790556	55801500
OR5D14_chr11_55790556_55801500	0/1	c0003	945	67	21	12	25	2	6	copy fasta	OR5D14	chr11	55790556	55801500
OR5D14_chr11_55790556_55801500	0/0	c0004	945	31	9	4	12	3	3	copy fasta	OR5D14	chr11	55790556	55801500
OR5D14_chr11_55790556_55801500	1/0	c0005	945	7	5	1	0	0	0	copy fasta	OR5D14	chr11	55790556	55801500
OR5D14_chr11_55790556_55801500	0/0	c0006	945	6	6	0	0	0	0	copy fasta	OR5D14	chr11	55790556	55801500
OR5D14_chr11_55790556_55801500	0/0	c0007	945	4	1	1	0	2	0	copy fasta	OR5D14	chr11	55790556	55801500
OR5D14_chr11_55790556_55801500	0/0	c0008	945	2	2	0	0	0	0	copy fasta	OR5D14	chr11	55790556	55801500
OR5D14_chr11_55790556_55801500	0/0	c0009	945	1	1	0	0	0	0	copy fasta	OR5D14	chr11	55790556	55801500
OR5D14_chr11_55790556_55801500	0/0	c0010	945	1	1	0	0	0	0	copy fasta	OR5D14	chr11	55790556	55801500
OR5D14_chr11_55790556_55801500	0/0	c0011	945	1	0	0	0	0	1	copy fasta	OR5D14	chr11	55790556	55801500
OR5D14_chr11_55790556_55801500	0/0	c0012	945	1	1	0	0	0	0	copy fasta	OR5D14	chr11	55790556	55801500
OR5D16_chr11_55833752_55844738	0/0	c0001	987	215	31	32	121	10	21	copy fasta	OR5D16	chr11	55833752	55844738
OR5D16_chr11_55833752_55844738	1/0	c0002	987	105	21	16	51	3	13	copy fasta	OR5D16	chr11	55833752	55844738
OR5D16_chr11_55833752_55844738	0/1	c0003	987	40	6	5	24	0	4	copy fasta	OR5D16	chr11	55833752	55844738
OR5D16_chr11_55833752_55844738	0/0	c0004	987	26	15	7	0	2	2	copy fasta	OR5D16	chr11	55833752	55844738