JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
OR5D16_chr11_55833752_55844738	0/0	c0005	982	12	11	1	0	0	0	copy fasta	OR5D16	chr11	55833752	55844738
OR5D16_chr11_55833752_55844738	0/0	c0006	987	8	8	0	0	0	0	copy fasta	OR5D16	chr11	55833752	55844738
OR5D16_chr11_55833752_55844738	0/0	c0007	987	7	0	6	0	1	0	copy fasta	OR5D16	chr11	55833752	55844738
OR5D16_chr11_55833752_55844738	0/0	c0008	987	5	1	2	0	2	0	copy fasta	OR5D16	chr11	55833752	55844738
OR5D16_chr11_55833752_55844738	0/0	c0009	987	1	0	0	1	0	0	copy fasta	OR5D16	chr11	55833752	55844738
OR5D16_chr11_55833752_55844738	0/0	c0010	987	1	0	1	0	0	0	copy fasta	OR5D16	chr11	55833752	55844738
OR5D16_chr11_55833752_55844738	0/0	c0011	987	1	0	0	1	0	0	copy fasta	OR5D16	chr11	55833752	55844738
OR5D16_chr11_55833752_55844738	0/0	c0012	987	1	1	0	0	0	0	copy fasta	OR5D16	chr11	55833752	55844738
OR5D18_chr11_55814630_55825571	0/1	c0001	942	280	78	48	114	11	28	copy fasta	OR5D18	chr11	55814630	55825571
OR5D18_chr11_55814630_55825571	0/0	c0002	942	113	4	27	68	5	9	copy fasta	OR5D18	chr11	55814630	55825571
OR5D18_chr11_55814630_55825571	0/0	c0003	942	14	0	0	14	0	0	copy fasta	OR5D18	chr11	55814630	55825571
OR5D18_chr11_55814630_55825571	0/0	c0004	942	9	0	0	9	0	0	copy fasta	OR5D18	chr11	55814630	55825571
OR5D18_chr11_55814630_55825571	0/0	c0005	942	4	1	1	0	2	0	copy fasta	OR5D18	chr11	55814630	55825571
OR5D18_chr11_55814630_55825571	0/0	c0006	942	3	3	0	0	0	0	copy fasta	OR5D18	chr11	55814630	55825571
OR5D18_chr11_55814630_55825571	0/0	c0007	942	3	0	2	0	0	1	copy fasta	OR5D18	chr11	55814630	55825571
OR5D18_chr11_55814630_55825571	0/0	c0008	942	2	0	0	0	0	2	copy fasta	OR5D18	chr11	55814630	55825571
OR5D18_chr11_55814630_55825571	1/0	c0009	942	2	1	0	0	0	0	copy fasta	OR5D18	chr11	55814630	55825571
OR5D18_chr11_55814630_55825571	0/0	c0010	942	1	1	0	0	0	0	copy fasta	OR5D18	chr11	55814630	55825571
OR5D18_chr11_55814630_55825571	0/0	c0011	942	1	0	0	1	0	0	copy fasta	OR5D18	chr11	55814630	55825571
OR5D18_chr11_55814630_55825571	0/0	c0012	942	1	0	0	1	0	0	copy fasta	OR5D18	chr11	55814630	55825571
OR5D18_chr11_55814630_55825571	0/0	c0013	942	1	0	0	1	0	0	copy fasta	OR5D18	chr11	55814630	55825571
OR5D3P_chr11_55718776_55734621	0/0	c0001	972	331	52	59	172	13	35	copy fasta	OR5D3P	chr11	55718776	55734621
OR5D3P_chr11_55718776_55734621	1/1	c0002	972	69	25	11	23	2	6	copy fasta	OR5D3P	chr11	55718776	55734621
OR5D3P_chr11_55718776_55734621	0/0	c0003	972	39	17	4	12	3	3	copy fasta	OR5D3P	chr11	55718776	55734621
OR5D3P_chr11_55718776_55734621	0/0	c0004	972	3	3	0	0	0	0	copy fasta	OR5D3P	chr11	55718776	55734621
OR5D3P_chr11_55718776_55734621	0/0	c0005	972	1	0	1	0	0	0	copy fasta	OR5D3P	chr11	55718776	55734621
OR5D3P_chr11_55718776_55734621	0/0	c0006	972	1	0	0	1	0	0	copy fasta	OR5D3P	chr11	55718776	55734621
OR5D3P_chr11_55718776_55734621	0/0	c0007	972	1	0	1	0	0	0	copy fasta	OR5D3P	chr11	55718776	55734621
OR5D3P_chr11_55718776_55734621	0/0	c0008	972	1	0	0	1	0	0	copy fasta	OR5D3P	chr11	55718776	55734621
OR5D3P_chr11_55718776_55734621	0/0	c0009	972	1	1	0	0	0	0	copy fasta	OR5D3P	chr11	55718776	55734621
OR5D3P_chr11_55718776_55734621	0/0	c0010	972	1	0	0	1	0	0	copy fasta	OR5D3P	chr11	55718776	55734621
OR5F1_chr11_55988681_55999625	0/1	c0001	945	300	60	45	155	11	28	copy fasta	OR5F1	chr11	55988681	55999625
OR5F1_chr11_55988681_55999625	0/0	c0002	945	70	1	17	42	1	9	copy fasta	OR5F1	chr11	55988681	55999625
OR5F1_chr11_55988681_55999625	0/0	c0003	945	29	7	1	18	0	3	copy fasta	OR5F1	chr11	55988681	55999625
OR5F1_chr11_55988681_55999625	0/0	c0004	945	8	4	2	0	2	0	copy fasta	OR5F1	chr11	55988681	55999625
OR5F1_chr11_55988681_55999625	0/0	c0005	945	7	7	0	0	0	0	copy fasta	OR5F1	chr11	55988681	55999625
OR5F1_chr11_55988681_55999625	0/0	c0006	945	6	0	3	0	3	0	copy fasta	OR5F1	chr11	55988681	55999625
OR5F1_chr11_55988681_55999625	0/0	c0007	945	5	4	1	0	0	0	copy fasta	OR5F1	chr11	55988681	55999625
OR5F1_chr11_55988681_55999625	1/0	c0008	945	3	2	0	0	0	0	copy fasta	OR5F1	chr11	55988681	55999625
OR5F1_chr11_55988681_55999625	0/0	c0009	945	3	3	0	0	0	0	copy fasta	OR5F1	chr11	55988681	55999625
OR5F1_chr11_55988681_55999625	0/0	c0010	945	2	0	1	0	0	1	copy fasta	OR5F1	chr11	55988681	55999625
OR5F1_chr11_55988681_55999625	0/0	c0011	945	1	0	0	0	1	0	copy fasta	OR5F1	chr11	55988681	55999625
OR5F1_chr11_55988681_55999625	0/0	c0012	945	1	0	0	1	0	0	copy fasta	OR5F1	chr11	55988681	55999625
OR5F1_chr11_55988681_55999625	0/0	c0013	945	1	0	0	0	0	1	copy fasta	OR5F1	chr11	55988681	55999625
OR5H14_chr3_98142479_98161614	0/0	c0001	933	248	62	38	111	9	28	copy fasta	OR5H14	chr3	98142479	98161614
OR5H14_chr3_98142479_98161614	1/1	c0002	933	155	14	33	82	7	17	copy fasta	OR5H14	chr3	98142479	98161614
OR5H14_chr3_98142479_98161614	0/0	c0003	933	7	5	2	0	0	0	copy fasta	OR5H14	chr3	98142479	98161614
OR5H14_chr3_98142479_98161614	0/0	c0004	933	7	7	0	0	0	0	copy fasta	OR5H14	chr3	98142479	98161614
OR5H14_chr3_98142479_98161614	0/0	c0005	933	6	5	1	0	0	0	copy fasta	OR5H14	chr3	98142479	98161614
OR5H14_chr3_98142479_98161614	0/0	c0006	933	1	0	0	0	0	1	copy fasta	OR5H14	chr3	98142479	98161614